Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00538 ATGAAAGCTCATAACTCGAgcttcaacatcatcatcataaccataatcttcttcttctcacttTCTCTATCCATCTCAGTTAACACTGCAAAAGTTATCAATGAATCCGATCATTATCATAGCACAAGAAGAATTCTCCATCAACCATTATTCCCTGCAAGTTCAgcaccaccaccatcaccaaccgtcacaccaccaccaccttctTCCTCCGACAACATTCCATTCTTCCATGAATATCCTGAAGGGCCACCGTCGGATCAAAATCAAGCAACACCGATAACTTCAAACGCTACAGCTGCAAATCCAACGGCAACACAACCAGCAAAAGGTACAAAAAAAGTAGCAATAGTAATTTCCGTTGGAATCGTAACGTTAGGAATGTTGTCGGCGTTAGCTTTCTTTTTATACAAACACAGAGCAAAACACCCTGCAGATACACAGAAACtagtgtgtactaacacacagaGGAATAATAATcacaatcaacaacaacaagatgATTCAAGTTCTAATGCTCCGGTTGTAGCTTCTAATTTTCTCTACATTGGAACGGTGGAACCTTCCAGAAGGTCAACAACGGTCAACGATCCGAACCAAACAGAGAAACCTAACCGTTCGCCGTATCATAAACTGAATTCAGTCAAGCGATCCGATCGGTATAGGCCGAGTCCTGAATTACAACCAATGCCGCCGTTGAGTAAACCTCCAGACGGAAACATACCGCCGGCGATGTCGCCGGAGTCTGATTCCGATGAAGAGAGTAACGAAACCGCGTTTCATTCGCCGCAGAATTCGTCGTTAAGTCAGGAAGATGGATTTTATACTCCGTTTTCAGTTTCACGACAGAGTTCTCTTGTTAACGGTAGTCCGGCGAAGAGAGAGAATCATTCGACCGTGACGCCTCTTCCTTTATCGAAGAGAACTTCACCGAAATCTCGTCTTTCTAATAATTCGCCGGATATTCGACACGTTATCATTCCGTCTATTAAACAGACTCCGCCGGAAAAACAGTTAACGACTTCCGGTGGACATTCAAGAAAACCAAAATTCTCAGCGCCACCACCACCTCCGAATTTGACGCATCTTCAATCAACAACTAATACATTCTCAAACGTCTCTAAAACTTCACATAATCCTCCTCCTGCTCCTCCTCCGCCGCCACCACCACCGCCTCCTCCTCCGCCAATGATTCGAAGATCAGTGTCTCCGACTCCTCCGGCGGTTTCAGGTGTTTCAGGTGGTGTTGATTCAGCTGGTAGTGTAAGAAAAGTTTCAGACTCTGTTTGTGATGAAGTTGATGAGAGTGTGAATTTGAGATCTTGTTCCGAGAGGTTTGAAGTTGAAGCCAATGAAACGGAAGGTGGAAAACCGAAGTTGAAAGCTTTGCATTGGGACAAAGTTCGTGCAACTTCAGATCGTGCTACTGTGTGGGACCAAATAAAATCAAGTTCATTTCAATTAAATGAGGATATGATGGAGACCTTGTTTGGTTGCAACAATAATGGAATGAATTCTTCTGCTACAAAACCAAAAGAACAAGGTGTGATAAAATCAGTTCTTCCTTCTGTGAATCATGAGAACAAGGTGTTAGATCCTAAGAAGTCACAAAATATAGCTATATTGTTAAGGGCATTGAATGTGACAAGAGATGAAGTTTCTGAAGCTCTTTTAGATGgGAATCCTGATGGTTTGGGTGCTGAGCTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGaagagataaaattgaaaaactatGACGGTGATCTCTCAAAACTTGGATCTGCAGAAAAATTTCTTAAAGCAGTGCTTGATATCCCTTTTGCCTTCAAAAGAGTTGAAGCTATGCTATACCGAGCTAACTTTGATTCCGAAATCAACTACCTCAAGAAGTCTTTCCAAACCCTGCAGGCAGCAAGTGAGGAGTTAAGGAACAGTCGGTTATTCTTCAAACTTCTTGAAGCTGTACTCAGGACAGGAAACAGAATGAATGTCGGCACTAATCGAGGTGATGCTAAGGCATTCAAACTAGACACACTCCTAAAACTCGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTCGTCCAAGAGATCATTAGGTCTGAAGGTGCAGAAACTGAATCTGCAAACGGAAATATTCCCGAACAAATGGAGTCCAAATTTAACGAGGAGCAGTTTAAGAAGAAAGGATTGCATGTTGTGAGTGGTCTCAGTAAAGACCTTGATAATGTTAAAAAAGCAGCAGGAATGGACTCGGATGTCTTAAGCGGCTATGTTACGAAGCTTGAAACGGGGCTTGAAAAAGTGCGGTTGGTTTTGCAATACGAGACGCCAGATATGAGAGGCAATTTCTTCAAATCCACAAAGCTCTTTATGAAATACGCAGAAGAGGAAATCGTGAGGATTAAGTCTCATGAAAGAGAGGCTTTATTCCTTGTGAAAGAAGTTACTGAATACTTTCATGGAAATGCAGCAAAGGAAgaagcacaccctttaagaattTTCATGATTGTGAGAGATTTTCTAAACATTTTGGATTTGGTTTGCAAAGAAGTAGGAAGGATGCATGATAGAATTGTTGGTGGTGCTTCAAGATCCTTCAGAATAGCTTCAAATGCATCATTACCTGTTCTTAACAGGTACAATGGGAAACAAGATAGAAGCTCGGATGAGGAAAGCTCATCGTCCCCTTAG 2718 0.3951 MKAHNSSFNIIIITIIFFFSLSLSISVNTAKVINESDHYHSTRRILHQPLFPASSAPPPSPTVTPPPPSSSDNIPFFHEYPEGPPSDQNQATPITSNATAANPTATQPAKGTKKVAIVISVGIVTLGMLSALAFFLYKHRAKHPADTQKLVCTNTQRNNNHNQQQQDDSSSNAPVVASNFLYIGTVEPSRRSTTVNDPNQTEKPNRSPYHKLNSVKRSDRYRPSPELQPMPPLSKPPDGNIPPAMSPESDSDEESNETAFHSPQNSSLSQEDGFYTPFSVSRQSSLVNGSPAKRENHSTVTPLPLSKRTSPKSRLSNNSPDIRHVIIPSIKQTPPEKQLTTSGGHSRKPKFSAPPPPPNLTHLQSTTNTFSNVSKTSHNPPPAPPPPPPPPPPPPPMIRRSVSPTPPAVSGVSGGVDSAGSVRKVSDSVCDEVDESVNLRSCSERFEVEANETEGGKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMETLFGCNNNGMNSSATKPKEQGVIKSVLPSVNHENKVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPDGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAEKFLKAVLDIPFAFKRVEAMLYRANFDSEINYLKKSFQTLQAASEELRNSRLFFKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAETESANGNIPEQMESKFNEEQFKKKGLHVVSGLSKDLDNVKKAAGMDSDVLSGYVTKLETGLEKVRLVLQYETPDMRGNFFKSTKLFMKYAEEEIVRIKSHEREALFLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLNILDLVCKEVGRMHDRIVGGASRSFRIASNASLPVLNRYNGKQDRSSDEESSSSP 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00538 905 MobiDBLite consensus disorder prediction 85 109 - -
Tsu05g00538 905 ProSiteProfiles Formin homology-2 (FH2) domain profile. 450 879 IPR015425 -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 184 423 - -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 185 208 - -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 225 243 - -
Tsu05g00538 905 SUPERFAMILY Formin homology 2 domain (FH2 domain) 386 863 - -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 378 402 - -
Tsu05g00538 905 SMART it6_source 450 868 IPR015425 -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 258 323 - -
Tsu05g00538 905 PANTHER FORMIN-LIKE PROTEIN 3 903 - -
Tsu05g00538 905 Gene3D Formin, FH2 domain 470 873 IPR042201 -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 50 111 - -
Tsu05g00538 905 Pfam Formin Homology 2 Domain 453 853 IPR015425 -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 333 347 - -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 52 72 - -
Tsu05g00538 905 MobiDBLite consensus disorder prediction 362 377 - -
Tsu05g00538 905 PANTHER FORMIN-RELATED 3 903 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00538 Tsu-Chr5 4388908 4393819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00538 435 894 FH2 protein (formin) Gene Family AT5G67470 68.898 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00538 - - mtr:MTR_5g015690 1363.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00538 05 4388908 4393819 Tsu05g00538 05 4388908 4393819 ECH
Tsu05g00538 05 4388908 4393819 Tsu04g02181 04 24141750 24146042 PCT