Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02703 ATGGATCCGGGAGCGATGATGAACGAGGGTTCATTTCCGAATGGAAGTGGAAATACGACGCCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCAGCTACGATTAATGGCGGCGGAGGTGGATTGGGATTAAGGAGACCACAGTTTGGTAATGGTTTAGGACAGTTTGGTGATTTTGGAAACGGTTCGAACCGGGATGTTGGTGGACTGGAGTCAAGAGTTGTTTTGAACCATGGTGGTGGTAAGAAGAGGCGTGACTCCGAAGATGATTCTGCTAAGTGTGTTTCCACCAGTAATGGCGGTGCCAATGCcgtgAATGATGGTGATGGAAAACGAACTAAAGCATCGGGAAACAGGAATGAAGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGTAGTAAGCCACCTCCTCCCGATCCTCCTAAGCAAGATTATATCCATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGCGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATCTTGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGAtgagataattaattatatccAATCACTTCAGCGCCAAGTGGAGTTTTTGTCGATGAAGCTCGAAGCAGTAAATTCAAGACTGAACACTGGCATCGAAGCCTTTCCTCCAAAAGATTTTGGTCAACAAACATTTGATCTTGCCGGCATGCCATTTGTTTCACAAACTACAAGAGAGCCAAGCAGAGGTTCATCCCCAGAATGGTTACATATGCAGGTAGGTGGCGGTTTCGAAAGAACAACGTAG 849 0.4511 MDPGAMMNEGSFPNGSGNTTPFSLAEIWQFPATINGGGGGLGLRRPQFGNGLGQFGDFGNGSNRDVGGLESRVVLNHGGGKKRRDSEDDSAKCVSTSNGGANAVNDGDGKRTKASGNRNEGGDGKVEGEASSGKPAEQSSKPPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQTFDLAGMPFVSQTTREPSRGSSPEWLHMQVGGGFERTT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02703 282 SMART finulus 167 217 IPR011598 GO:0046983
Tsu03g02703 282 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 282 IPR024097 GO:0006355
Tsu03g02703 282 CDD bHLH_AtBPE_like 152 236 - -
Tsu03g02703 282 PANTHER BNAC05G07950D PROTEIN 1 282 - -
Tsu03g02703 282 Gene3D - 158 234 IPR036638 GO:0046983
Tsu03g02703 282 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Tsu03g02703 282 MobiDBLite consensus disorder prediction 111 127 - -
Tsu03g02703 282 Coils Coil 208 228 - -
Tsu03g02703 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 228 IPR036638 GO:0046983
Tsu03g02703 282 MobiDBLite consensus disorder prediction 76 91 - -
Tsu03g02703 282 MobiDBLite consensus disorder prediction 76 152 - -
Tsu03g02703 282 MobiDBLite consensus disorder prediction 256 282 - -
Tsu03g02703 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02703 Tsu-Chr3 35078117 35081612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02703 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.130 1.41e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu03g02703 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02703 - - gmx:100784478 385.571