Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00741 atgaaAGTACAATCAACTATGAAGCTTCAAAATCTGAAGCAAAACCTATCAagatcaaattttgaaacaaaccCATCATGCAAAACCACCACAAAAACCCAAACCCGCAAAAACAAGCTTATCCGCATCATTCTCACCGATTACGATGCAACCGATTCAGACTCTTCCGGCGACgatgaaaagagagaaaaccCATCAAAATTTCGAagaggaaaaagagaaattacCCAAATCACCATGCAATATCCTCTTATTTCTAATTCTCCAACAATTTCACCTCCTTCTTCATCTTGCTCCGTTGACCCGACCCGTTTCAAAAGACCCAAAAAAACAACCACCGGTTCTAACACTTCTCGCCGGCAAAGCATGTACCGTGGTGTTCGTCAGAGACCTGGGGGACGATGGACAGCTGAGATCTGTGACCCGAACAGAAGAAAACGGGCCTGGTTAGGAACTTTTGACACGGCGGAGGAAGCCGCCGCTAAATACGACGAAGCCGCCGTGAAATTTAAAGGTTCAAAGGCCGTTACCAACTTTCCAAAACGCGCCGCTGTTAATGATGTTAGTGAGCCAGTGAAGATTTTCTCCGGCGACGGTTTTGCTTCTCCGACTTCTGTTCTTCCTTTGTACGACGGTGATTCAACGCCGTTTGACAGTTTACGTTACGGCGCTGTGGATGCTTTTGGGTTTGAAATTGACGTGCCGTTAAGTTTAACGGACGTTAACTTTGTTCCGTTtgggaaagaaaaagaagagtttgGTGAGTTTGACTTGGACGAGTTCCTAACGTGGCCAAGTTAA 801 0.4145 MKVQSTMKLQNLKQNLSRSNFETNPSCKTTTKTQTRKNKLIRIILTDYDATDSDSSGDDEKRENPSKFRRGKREITQITMQYPLISNSPTISPPSSSCSVDPTRFKRPKKTTTGSNTSRRQSMYRGVRQRPGGRWTAEICDPNRRKRAWLGTFDTAEEAAAKYDEAAVKFKGSKAVTNFPKRAAVNDVSEPVKIFSGDGFASPTSVLPLYDGDSTPFDSLRYGAVDAFGFEIDVPLSLTDVNFVPFGKEKEEFGEFDLDEFLTWPS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00741 266 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Tsu03g00741 266 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 32 262 - -
Tsu03g00741 266 MobiDBLite consensus disorder prediction 79 102 - -
Tsu03g00741 266 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Tsu03g00741 266 PIRSF PTI6 7 266 IPR017392 GO:0003700
Tsu03g00741 266 MobiDBLite consensus disorder prediction 109 124 - -
Tsu03g00741 266 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Tsu03g00741 266 MobiDBLite consensus disorder prediction 50 135 - -
Tsu03g00741 266 Pfam AP2 domain 124 172 IPR001471 GO:0003700|GO:0006355
Tsu03g00741 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 262 - -
Tsu03g00741 266 MobiDBLite consensus disorder prediction 55 74 - -
Tsu03g00741 266 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Tsu03g00741 266 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Tsu03g00741 266 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Tsu03g00741 266 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Tsu03g00741 266 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00741 Tsu-Chr3 6601500 6602655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00741 32 179 AP2-EREBP Transcription Factor Family AT4G27950 44.966 7.28e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu03g00741 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00741 K13434 - gmx:102660028 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00741 03 6601500 6602655 Tsu03g00741 03 6601500 6602655 ECH
Tsu03g00741 03 6601500 6602655 Tsu05g03018 05 40589471 40591166 PCT