Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04028 ATGCCTCTTTATGAGTTATACCGTATGGCTAGAGAGAAGCTTGGTAATGAGACTACTAATAGCACAAGTGTAGCTGATCAACCTTCCTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGTCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTACCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGAAGGATATGGTAATAACAATCCGAAGACAGGAAAATTTTGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGTGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGTTCTTTTCAAACTGAATATGGTTCTGATTTCTTACATGAACTTACGGAGAATGATGACCTTCCCGCGGCCTCGAATAATTTTACTCTGTTGGAGAAAAGGAGTAACGGTAATCAGATGTTTAGGGACTCTCATAAAAGTTCTGCAGAACCGGTGAATGTTTCTAAGGATTCTTCGGCCGAACAGGTTGAGACTGCAAGACATAAAGGTAGCACAAGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACATCATTTGTAACTGTTAGATCCGGGGCATCGAATATAACTGAGAATAACAATCCAAGTAATGTTAACCAGGGTGTGCCTTACAGTGAAATTGATCGTATTCCATCTTCATCGAGCGATTTTTCTAGCTTAAAAGTGCAGAAGCAAGATCCTATATTGCCTGGCAATGTTTCCAATGTAATGAATTTTTCCCATTTCGCAAGGCCTGCTGCTATTGCGAGAGCTAATCTTCAGAACATCGGCATGAAGTCTAGTTTGAATTCAGCTTCAGCAAGATCAAATTGTATGGGAATTAAGAATAGAGGCGAAGCTTCGACTAGCAGCAATCCCACCGAGTCAACTCTTGTTAATACCAGCGGTGAATGTTCAAAGGAACCGGTAATGCGTTGTCAGAAGGTGGTGGAGCAATCTAAGGCTGACTTGAAACCTTTGCAGCCGAAATCTCTTGAACTGAATACTTTAGCTTCTAAACAATCGGAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGACCAGCGTTCCAATCAAGTTCTTGGTGACGGTGGCACTAAAGGACAAACAGGTGCTGAAAAAGGTATGGAGGCGGCCGTAGCCTCTTCTTCTATTTGCTCTGGTAATGGTGCAGACAGAGGCTCGGATGATCTGAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCCGAATGTCATAGTGAAGATGTTGAGGATGAATCAGTGGGTGTTAAAAAGGGAGGTTCGGGACGAGGAGTTGCAGGTTCCAAAAGAAGTCGTGCTGCTGAAGTGCATAACCTATCCGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCACAAATGATGTTACCTCCTGGAATGCAGCACATGCATGCGCCACACATGGCTGCATTTTCACCTATGGGCATTGGCATGCATATGGGATTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGATCTTCTAGATATCCAATGATGCAGGTGCCTCCTCAGATGCAAGGAACTCATATTCCTGTTGCACATATGTCCGGACCTTCTGCTATGCATGGTATGGCCAGATCAAATCCTCAAGGGTTTGGACTTCCGGGTCAGGGAGTTTCCATGCCAATGCCGCGTGGTCATGGATTTCCTTTTACGGGAGGGCCTCTTATGAACTCTGCGTATGGATCCACAGGAACTGTTGAAACTGTGAATCCAGCTTCAGCATCTGGCTCAAAAGATCCAATGCAAAATGTGGACTCACAAATTAAGCAAAACACCGGTGGCCGTGACTCTACAAGCCAGATTCCTAATCAGTCGGCTTTGGTGCATAATGGTGGTCATGCCTCAGTGGCTGATGACAGTGGAGCTGCTAATCCTGGCAATATCACTTTATGA 2151 0.4375 MPLYELYRMAREKLGNETTNSTSVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGEGYGNNNPKTGKFCDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSFQTEYGSDFLHELTENDDLPAASNNFTLLEKRSNGNQMFRDSHKSSAEPVNVSKDSSAEQVETARHKGSTSQLYPPSSNQCQTSFVTVRSGASNITENNNPSNVNQGVPYSEIDRIPSSSSDFSSLKVQKQDPILPGNVSNVMNFSHFARPAAIARANLQNIGMKSSLNSASARSNCMGIKNRGEASTSSNPTESTLVNTSGECSKEPVMRCQKVVEQSKADLKPLQPKSLELNTLASKQSEPACKENGIKNDQRSNQVLGDGGTKGQTGAEKGMEAAVASSSICSGNGADRGSDDLNRDLKRKSRDTEDSECHSEDVEDESVGVKKGGSGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPPGMQHMHAPHMAAFSPMGIGMHMGLGMGYGMGMPDMNGGSSRYPMMQVPPQMQGTHIPVAHMSGPSAMHGMARSNPQGFGLPGQGVSMPMPRGHGFPFTGGPLMNSAYGSTGTVETVNPASASGSKDPMQNVDSQIKQNTGGRDSTSQIPNQSALVHNGGHASVADDSGAANPGNITL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04028 716 MobiDBLite consensus disorder prediction 308 330 - -
Trre9g04028 716 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 531 IPR036638 GO:0046983
Trre9g04028 716 PANTHER TRANSCRIPTION FACTOR PIF3 1 686 IPR044273 GO:0003700|GO:0006355
Trre9g04028 716 Gene3D - 463 526 IPR036638 GO:0046983
Trre9g04028 716 MobiDBLite consensus disorder prediction 14 33 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 649 696 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 14 30 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 649 716 - -
Trre9g04028 716 Pfam Helix-loop-helix DNA-binding domain 472 518 IPR011598 GO:0046983
Trre9g04028 716 MobiDBLite consensus disorder prediction 308 331 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 160 208 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 359 391 - -
Trre9g04028 716 FunFam Basic helix-loop-helix transcription factor 463 526 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 420 453 - -
Trre9g04028 716 CDD bHLH_AtPIF_like 468 530 IPR047265 -
Trre9g04028 716 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Trre9g04028 716 SMART finulus 474 523 IPR011598 GO:0046983
Trre9g04028 716 MobiDBLite consensus disorder prediction 359 477 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 46 98 - -
Trre9g04028 716 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04028 Trre-Chr9 48318375 48321407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04028 1 586 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.294 5.39e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g04028 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04028 K12126 - gmx:100794974 954.896