Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03215 ATGGGTCCACCAACAAATCGCAAACAAAAGTTGTCTTGCATCCCTGAAAGCACAAGAAGATTGAAAGTTATCTATGATGATCCTGATGCAACAGATTCATCATCCGACGAAGCAAATTACGATCCAATGATGAGGAAGAGAGTTGTTCTTGAATTTGCACTCCCTGATGTTTGTGTTAATGAAACAAAGGTTGATAATGTATCAAACAAGAATAAGAATTCTGCAAAGACAACAACACCTATAGTGAAAGAACAAACATGCAAATACAAAGGTGTTCGAATGAGAAAATGGGGTCGATGGGCTGCTGAAATTCGTAATCCGATTAAAGGTACGCGCGAATGGTTAGGAACTTTCAACACTGCTGAAGAGGCTTCGAAAGCGTATGAAACTAAAAAACTTGAATTTGAAGCCATAACTAAGAAGAGTACTACGTGTAAAGTGAAGAAAAACAACAGCTATAATAGTGTTGTTACTTTTGAGAATATGTTTGCTTCTATGAATGGCGGTGGCGGCTCAAAGAGTGATACTGATACATCGAATACATCATCTTTGCCGAAATTGGTTAATTCGGTTGATGTGATTCAGAGTGGTAAGGCTTTGATCAATGAAGCGATCGTTGAGAGTCTCGAGACTAATAATCGTTTGAAGGGTGAATTTTTGGAACAAAAAAATGTTCCCGATTTAAGTCCTTTGAACGTAGTGCAACAACCGGATGTCATTGAGAATTTGGAGACAACTCGGTTGGATTTGAATTGGTTAACATTCGATGGTTCGGGGCAGGGGATGGATGATCTTGGTTGCCTTCACGACCTTCAGTATTGTGATTTTGACAATAACAATGGTCCTATCGATATTCCGGAATTTTATTTTGATGATAACAATGGTCCTTTCGATATTCTGGATTTTAATTTTGACGATATTTGCGCTGATGAGAGTGTTGCCGATGAGAGTGTTGCTGATGAGATTGCTAGTTGGATTGAAGACATCCCAGATAAACCATGTCCATAA 1008 0.3869 MGPPTNRKQKLSCIPESTRRLKVIYDDPDATDSSSDEANYDPMMRKRVVLEFALPDVCVNETKVDNVSNKNKNSAKTTTPIVKEQTCKYKGVRMRKWGRWAAEIRNPIKGTREWLGTFNTAEEASKAYETKKLEFEAITKKSTTCKVKKNNSYNSVVTFENMFASMNGGGGSKSDTDTSNTSSLPKLVNSVDVIQSGKALINEAIVESLETNNRLKGEFLEQKNVPDLSPLNVVQQPDVIENLETTRLDLNWLTFDGSGQGMDDLGCLHDLQYCDFDNNNGPIDIPEFYFDDNNGPFDILDFNFDDICADESVADESVADEIASWIEDIPDKPCP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03215 335 CDD AP2 87 128 IPR001471 GO:0003700|GO:0006355
Trre9g03215 335 Gene3D AP2/ERF domain 87 144 IPR036955 GO:0003700|GO:0006355
Trre9g03215 335 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Trre9g03215 335 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 136 - -
Trre9g03215 335 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Trre9g03215 335 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Trre9g03215 335 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Trre9g03215 335 Pfam AP2 domain 87 130 IPR001471 GO:0003700|GO:0006355
Trre9g03215 335 SUPERFAMILY DNA-binding domain 88 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03215 Trre-Chr9 40889162 40890169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03215 7 292 AP2-EREBP Transcription Factor Family AT1G68550 33.221 1.11e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g03215 AP2 5.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03215 - - tpra:123904484 434.876