Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02322 ATGGGTAGGTCACCTTGTTGTGAGAAAGTTGGATTGAAGAAAGGTCCATGGACTCCTGAAGAAGACCAAAAACTCATTGCTTATATTGAAGAGTTTGGTCATGGAAGCTGGCGTGCATTACCTTCCAAAGCCGGGCTTCAAAGATGTGGAAAGAGCTGTAGACTAAGATGGACTAACTACCTCAGACCAGACATAAAAAGAGGAAAGTTTAGTTTGCAGGAAGAGCAAACTATTATTCAACTTCATGCCCTTCTTGGTAACAGATGGTCCGCCATAGCGGCACAACTTCCGAGAAGAACAGACAACGAGATAAAGAACTATTGGAACACGCACCTAAAGAAAAGGTTAACAAGAATGGGAATAGACCCTATAACTCACAAACCAAAAACAAATCAAACATCAGGTGGAAGTTCAAGTTGTAGTCAGTATTCCAAAGACTCAGCTAACCTAAACCACATGGCTCAATGGGAAAGTGCTCGTTTAGAAGCTGAAGCAAGACTTGTTAGAGAAACAAACAAATTGAAAGTTCAAAAACAACTTCAATTTGAATCCTCAAAACCACAAGCAGCAAGACTTTTTCTTAACAAAATCACACCACTTCAACAACCTTCACTTCCACCTTGTCTTGATATCCTTAAAGCATGGCAGAGTTCATGGTCCAAACCAACAACAACAACAACAACAACAAAAGATGAAACAAACAACAAAATTCATAGCATGTATGCTATGATGTTATCTAATGATGAAAATCTTGAATCTCCAACATCTACTTTAAATTTCCCTGGAACAAATCTACTTCCTCTGCCTCCACCTGTTCCTCTGTCTCTTCCTGTTTCTGTTCCTATCACCAACCACATTAATGTTGTAGCATTCAATCAAAATCTACTTTCTCCTTTAACTGAAAGCATCAACAATGATGATGAGATATGGAAACAATTCAATTTAACCAAACAGAACACTACAGAAGCTGATGATCATCATCATGATCATGATAACAACAATGTCAATAACAACATGCTAAACTTTCAGCAAGATGATGATATAATGGCAGCAGTGGAAGCATTTAGATCATGTGGTGGATTTGAAAATAATATTAACACCCCTCCAATTTCAACAAATGTTCTTCAAGTTCATGAAAATTTAGATGGAAGCATGATGTGTAACGTGAATCTTGAAGAGAATAAGCATTATTGGAATAGTATACTTGGTTTAGTTAATGAATCTGATGACATGAACATTAATGTTCTATGA 1251 0.3709 MGRSPCCEKVGLKKGPWTPEEDQKLIAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPRRTDNEIKNYWNTHLKKRLTRMGIDPITHKPKTNQTSGGSSSCSQYSKDSANLNHMAQWESARLEAEARLVRETNKLKVQKQLQFESSKPQAARLFLNKITPLQQPSLPPCLDILKAWQSSWSKPTTTTTTTKDETNNKIHSMYAMMLSNDENLESPTSTLNFPGTNLLPLPPPVPLSLPVSVPITNHINVVAFNQNLLSPLTESINNDDEIWKQFNLTKQNTTEADDHHHDHDNNNVNNNMLNFQQDDDIMAAVEAFRSCGGFENNINTPPISTNVLQVHENLDGSMMCNVNLEENKHYWNSILGLVNESDDMNINVL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02322 416 Gene3D - 69 116 - -
Trre8g02322 416 CDD SANT 69 112 IPR001005 -
Trre8g02322 416 Coils Coil 153 173 - -
Trre8g02322 416 CDD SANT 16 61 IPR001005 -
Trre8g02322 416 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 301 - -
Trre8g02322 416 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre8g02322 416 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g02322 416 MobiDBLite consensus disorder prediction 122 144 - -
Trre8g02322 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g02322 416 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre8g02322 416 FunFam MYB transcription factor 68 129 - -
Trre8g02322 416 Gene3D - 11 67 - -
Trre8g02322 416 FunFam MYB-related transcription factor 13 66 - -
Trre8g02322 416 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre8g02322 416 SMART sant 13 63 IPR001005 -
Trre8g02322 416 SMART sant 66 114 IPR001005 -
Trre8g02322 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g02322 416 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre8g02322 416 MobiDBLite consensus disorder prediction 126 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02322 Trre-Chr8 18671063 18672859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02322 1 272 MYB Transcription Factor Family AT3G01140 60.294 1.01e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g02322 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02322 K09422 - gmx:100799222 460.685