Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05230 ATGATGATGTCAGGTTTTGTTCCTGTCTCTTCCAGAGAACTAGAAGAGACAAGAACAAAACCTCCTCATATGTATTCTTCCAGTTCATCATCATGGGTTGGACACAAAAGAGGGCGTGAAGATGATGATGTAGTTGGTGTTGGTGTTTCTTCTTCTCATCAAGATATGACTACAATTCATAGAAATATTGCTGATTTTAGATTACCTACTTCACAGGGAAACTCATTATCATCAGCAACAGAAGCAACTACACCTACAAGTACAAGCAATGCAACACAATCGAATGAAGGCGCAACAACAAACGAAGAAGAAACCGGAGAGAAAAGAAGAAGATACCGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGCGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTCGACACAGCAGAAGCCGCGGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCAAAACTCAACTTTCCTGAAAATGTTACATCAACAAGACCAACTTTTCCGACAAATACTTCCACCGTATCTAATTCTCCGGCAACCCATTATTCTCCGGCACCACCACAACCACAGCAAATGCAGACACAGACACAGACACATCCACCGTTTGTTCAATTTCAAGGAACTTCTGATTTGTTAAGAGACTATTATCAATATTCACAGATTCTAAAAGGTTCAGGTGATTTTCAAGGACTTGAGCAATGGTTCTATGAATCACAAATGGCAGCGATACATTCATCATCATCTTCTTCGTTGTTGGTATCGCCTTCTCCATCGCTTTCTTTGTCATCATCTTCATCTCCAACTCCATTTTTACCTTCTAGTCAACTATCCTCTGGTTCACTTCCCCTGTTTCCTGGTCAGCAAATGGAGTTTTTCGGGTCACCGGAAGATCAATCTCGCAGCGGAGGATATGGTGGTGGCCCTGGTGGGTCCCATTTTCAACCCTCGTGGTCAGATACCGGTGGCTATCCTCCTCCTCCTCCTCCACCACCTTCTTCTAGTTGA 1038 0.4345 MMMSGFVPVSSRELEETRTKPPHMYSSSSSSWVGHKRGREDDDVVGVGVSSSHQDMTTIHRNIADFRLPTSQGNSLSSATEATTPTSTSNATQSNEGATTNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTSTRPTFPTNTSTVSNSPATHYSPAPPQPQQMQTQTQTHPPFVQFQGTSDLLRDYYQYSQILKGSGDFQGLEQWFYESQMAAIHSSSSSSLLVSPSPSLSLSSSSSPTPFLPSSQLSSGSLPLFPGQQMEFFGSPEDQSRSGGYGGGPGGSHFQPSWSDTGGYPPPPPPPPSSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05230 345 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Trre1g05230 345 MobiDBLite consensus disorder prediction 331 345 - -
Trre1g05230 345 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Trre1g05230 345 CDD AP2 119 170 IPR001471 GO:0003700|GO:0006355
Trre1g05230 345 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Trre1g05230 345 PANTHER DNA-BINDING DOMAIN 78 228 IPR044808 GO:0003700|GO:0009873
Trre1g05230 345 MobiDBLite consensus disorder prediction 1 44 - -
Trre1g05230 345 MobiDBLite consensus disorder prediction 168 208 - -
Trre1g05230 345 MobiDBLite consensus disorder prediction 264 295 - -
Trre1g05230 345 MobiDBLite consensus disorder prediction 67 113 - -
Trre1g05230 345 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Trre1g05230 345 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Trre1g05230 345 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Trre1g05230 345 MobiDBLite consensus disorder prediction 67 100 - -
Trre1g05230 345 MobiDBLite consensus disorder prediction 264 345 - -
Trre1g05230 345 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Trre1g05230 345 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05230 Trre-Chr1 58265470 58267248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05230 108 189 AP2-EREBP Transcription Factor Family AT5G13330 70.732 1.59e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g05230 AP2 6.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05230 - - tpra:123903609 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01037 11 9506586 9509133 Trre1g05230 1 58265470 58267248 PCT