Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00932 ATGGAAGATTTCATCATTTCACCTTCTTCATCTTCTTCTATGATTTCACTCAACCATGAAAACCCTTCACCTCAAACACAAACACAAACCCTTCAACAAAAGCTTCAATTTTTACTCGAAACTCAATCCGACAATTGGGTCTATGCCATTTTTTGGCAAACAACAAAAGATGAAAAAGGTAACACTTTCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAAAGAAACAACAACAACAACAACAACAACTACTACTTCAAACAAATCAGACACTGACACGTGTACAAACGGTGATGCTGAATGGTTCTATGTTATGTCGTTGACTCGAAATTTTAGTGTCGAATATTGTCCACAATTAGAAACACCAAAAAATGAGTGTCTTGATGAGAAAAGAGAATTGAAGAAGAGAGGAAGAAAACCATTAACAGGAACAACTCAAACACCAATGAACCATGTAGAAGCAGAGAGACAGAGGAGAGAGAAACTAAATCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGGATGGATAAAGCTTCTTTGTTATCAGATGCAGTTGATTATATCAATGAATTAAAAGCAAAGATTAAAGATTTAGAGTCAGAGAAGAAAAGGGAATCTAAAAAGGTGAAGATGGAAACTATGGATAATCAAAGTACAGTGACAACTTCAACTGTTGTGGATCAAAAAAGACATTGTAATAATAGTGTTATTGCTTTGGAAATTGATGTGAAGATTATAGGAAATGATGCTATGATTAGAGTTCAATCAGAGAATGTTAATCATCCTGGTGCTAGATTAATGAGTGTATTTAAGGATTTGGAATTTCAGGTACATCATGCTAGTATATCTTGTGTTAATGATGTTATGCTTCAAGATGTTGTTGTTGTTCAAGTTCCTAATGAGATGAGAAATGAAGAGAGTCTTAAATCTGCAATTCTCATGAGATTATTAGATGATCAAGAGTGA 981 0.3435 MEDFIISPSSSSSMISLNHENPSPQTQTQTLQQKLQFLLETQSDNWVYAIFWQTTKDEKGNTFLSWGEGHFQGTKETTTTTTTTTTSNKSDTDTCTNGDAEWFYVMSLTRNFSVEYCPQLETPKNECLDEKRELKKRGRKPLTGTTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIKDLESEKKRESKKVKMETMDNQSTVTTSTVVDQKRHCNNSVIALEIDVKIIGNDAMIRVQSENVNHPGARLMSVFKDLEFQVHHASISCVNDVMLQDVVVVQVPNEMRNEESLKSAILMRLLDDQE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00932 326 SMART finulus 153 202 IPR011598 GO:0046983
Trre15g00932 326 PANTHER MYC 12 115 IPR045084 GO:0003700|GO:0006355
Trre15g00932 326 MobiDBLite consensus disorder prediction 1 27 - -
Trre15g00932 326 Gene3D - 144 213 IPR036638 GO:0046983
Trre15g00932 326 Pfam Helix-loop-helix DNA-binding domain 151 196 IPR011598 GO:0046983
Trre15g00932 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Trre15g00932 326 Coils Coil 186 220 - -
Trre15g00932 326 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 115 IPR025610 -
Trre15g00932 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00932 Trre-Chr15 7164877 7166334 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00932 126 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.000 4.84e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00932 bHLH-MYC_N 6.5e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00932 - K13422 var:108347008 246.514