Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05200 ATGGGGAAGGCAAGCAAATGGATTAGAAACCTTCTTTTAGGGAAAAAAGAAGAGAACTTAAAGCAGATTGATACATTCTGCTCCGAGAATAAGACTGCAAACACGGTTAATAGTAGTAGCAGTAATAATAAGATAGTAGTGAAGCGCAAATGGAGTTTCCGAAAACTAACAAGTGGAAGATCAACAGGAAAAGTAGTAGCTCATAAAATTTCCAAGTCTTTTGACTCAGTTGATTCTCCAAAATTGCAAATACAAGCCTTAATGTTCCAAACTCAGACCCCAAGAACAGCTGCTGAATTTGTAAGAACAGCCGCTACAAGGATTCAAGCTTCCTTCCGCTCCTATTTGGCAAGGAGAGCATTGCATGCTTTAAGAGGATTAGTGAAGTTACAAGCACTGGTGAGGGGTCACCTTGTAAGGAAACAAACAACTGCAACACTGCGTGGGATGCATGCATTGATGTCGATACAGGTTAGAGCTCGAATTAAAAGGATTAAGATGGCAGAAGAAGTTATTCCCCCGGAAATATCACCTCCCCAACACACAGAAAGTCCCTGCTTCGAAGAGTACATGACACAACCAAAACAACATCAAGATTCAAAGAATATGAATGTGGAAGAAATGTTAGAGGCATTGAGGAGTAGAAGTGGGCCACTAGATGTAAAGAGCAGAAAATATGATTCAATGGCATATTATTCAAAGAGTGAATCAATTTCAAAACGAGAAAATCAATTGAAGAAGGAGAATCATAACAATAACAATAACAATACTACTACTACAATCATCACAGCACCAAACAGCCCAGAAAAATACTACAGAGACATGATTGATTTTGATTATTTAAATCCAAGATCATCAATTGCATTATCAACATCACAGCGCCACATGGCGCCTCCTCGACAATCATGGTCATCACCAAAAAATTACATGAACAAGACAGAATCTTCAAAGGCAAAAACAAGGTCTAGTAGTGAACCAAGACAAAGACCTACCAAACAAGGAACAAAGCAAAAAAACAGCAATTCTATAGAATCTAGTACTTCATTGAAGAAAAATATGTTGTCAAATTCAGCAAGGTATGATCATTGGGTTGTTAATTCAATGAAGGATAGTAACCGTAACTCCTTTGGTAGCTACACAGTCACTACTAGTGATGATTCCTACTACTCATGA 1173 0.3802 MGKASKWIRNLLLGKKEENLKQIDTFCSENKTANTVNSSSSNNKIVVKRKWSFRKLTSGRSTGKVVAHKISKSFDSVDSPKLQIQALMFQTQTPRTAAEFVRTAATRIQASFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMSIQVRARIKRIKMAEEVIPPEISPPQHTESPCFEEYMTQPKQHQDSKNMNVEEMLEALRSRSGPLDVKSRKYDSMAYYSKSESISKRENQLKKENHNNNNNNTTTTIITAPNSPEKYYRDMIDFDYLNPRSSIALSTSQRHMAPPRQSWSSPKNYMNKTESSKAKTRSSSEPRQRPTKQGTKQKNSNSIESSTSLKKNMLSNSARYDHWVVNSMKDSNRNSFGSYTVTTSDDSYYS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05200 390 Gene3D - 98 153 - -
Trre13g05200 390 MobiDBLite consensus disorder prediction 289 317 - -
Trre13g05200 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 143 IPR027417 -
Trre13g05200 390 Pfam Protein of unknown function (DUF4005) 299 366 IPR025064 -
Trre13g05200 390 MobiDBLite consensus disorder prediction 367 390 - -
Trre13g05200 390 PANTHER IQ-DOMAIN 5-RELATED 1 350 - -
Trre13g05200 390 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
Trre13g05200 390 MobiDBLite consensus disorder prediction 249 266 - -
Trre13g05200 390 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515
Trre13g05200 390 Pfam IQ calmodulin-binding motif 128 142 IPR000048 GO:0005515
Trre13g05200 390 ProSiteProfiles IQ motif profile. 102 129 IPR000048 GO:0005515
Trre13g05200 390 MobiDBLite consensus disorder prediction 247 266 - -
Trre13g05200 390 MobiDBLite consensus disorder prediction 327 351 - -
Trre13g05200 390 MobiDBLite consensus disorder prediction 289 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05200 Trre-Chr13 57415552 57417597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05200 1 337 IQD Protein Family AT4G14750 33.521 1.92e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05200 - - psat:127129486 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05200 13 57415552 57417597 Trre13g05200 13 57415552 57417597 ECH