Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8669g00001 GAAAACATTCCAATTGATGAAGTCTTTCAGCAGCTAAAATGTACAAAAGAGGGTCTCTCATCCGAGGAAGGAGAGAAGAGGCTCCAGATTTTTGGACCCAACAAGCTAGAGGAGATAACAGAGAGCAAACTCCTCAAGTTTTTGGGTTTTATGTGGAATCCATTATCATGGGTTATGGAGTCAGCTGCCATCATGGCCATTGTATTGGCCAATGGAGGTGGAAAGCCACCGGATTGGCAAGATTTCACTGGTATTATGGTGTTGCTTGTCATTAACTCAACTATTAGTTTTATTGAGGAAAACAATGCCGGAAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCCCCCAAAACCAAGGTGTTGAGGGATGGAAAATGGAGTGAGCAAGAGGCAGAAATTTTGGTACCTGGAGATGTGATCAGCATCAAGTTGGGAGACATTGTCCCAGCTGATGCGCGTCTCTTGGAAGGAGATCCCTTAAAAATTGACCAGTCTGCCCTCACTGGTGAGTCATTGCCAGTAACAAGGAACCCTGGTGATGAGGTCTTCTCTGGTTCAACTTGCAAACAAGGTGAAATTGAGGCTGTTGTCATTGCCACCGGTGTCCACACCTTCTTTGGTAAGGCTGCACACCTTGTAGACAGTACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACATCTATCGGTAACTTCTGTATCTGCTCAATTGCCGTGGGAATGTTGATTGAGATCATTGTGATGTACCCCATCCAGCATAGAGCTTACAGAGATGGTATTGACAACTTGTTGGTACTTCTCATTGGAGGTATCCCAATTGCCATGCCAACTGTCTTGTCTGTGACCATGGCTATCGGATCTCACCGCCTTTCTCAGCAAGGAGCTATTACCAAGAGAATGACAGCTATTGAAGAAATGGCAGGAATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTAACTCTTAACAAGCTTACTGTGGACAAGACCTTGATTGAG 999 0.4525 ENIPIDEVFQQLKCTKEGLSSEEGEKRLQIFGPNKLEEITESKLLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFTGIMVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAEILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAVGMLIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8669g00001 333 ProSitePatterns E1-E2 ATPases phosphorylation site. 315 321 IPR018303 -
Trme8669g00001 333 Gene3D - 310 322 IPR023214 -
Trme8669g00001 333 Gene3D - 17 214 - -
Trme8669g00001 333 Gene3D - 49 309 - -
Trme8669g00001 333 NCBIfam HAD-IC family P-type ATPase 85 331 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme8669g00001 333 SUPERFAMILY Calcium ATPase, transduction domain A 116 213 IPR008250 -
Trme8669g00001 333 FunFam Phospholipid-transporting ATPase IC 310 322 - -
Trme8669g00001 333 Pfam Cation transporter/ATPase, N-terminus 3 65 IPR004014 -
Trme8669g00001 333 PRINTS P-type cation-transporting ATPase superfamily signature 163 177 - -
Trme8669g00001 333 PRINTS P-type cation-transporting ATPase superfamily signature 313 327 - -
Trme8669g00001 333 SMART Cation_ATPase_N_a_2 1 71 IPR004014 -
Trme8669g00001 333 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 308 IPR023298 -
Trme8669g00001 333 PANTHER CALCIUM-TRANSPORTING ATPASE 3 333 - -
Trme8669g00001 333 Pfam E1-E2 ATPase 115 292 - -
Trme8669g00001 333 FunFam Plasma membrane ATPase 116 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8669g00001 Trme-Chr8669 128 1744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8669g00001 1 333 Primary Pumps ATPases AT3G42640 90.991 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8669g00001 K01535 - csav:115724825 605.52