Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme475168g00001 AAACCAGTGCCGTTCCTGTTTCTCTGTTTGGCATTCAATCTGATTGGAATTAAAGAGAATGGGAGGATTACAAAGACGGAAGTTTTGTGCAATCTTTTGAGAACTGTGATTCACGCTACGCCGGAGGATTTATTGCCGGTTGTTTATCTCTTCTCATGCTGTATTGCTCCACCACATGAAGGGTTGGAATTGGGAATCGGAGAACCTACCGTTCTTGAGGTTGTCGCCGACGCTTATGGTACCGCTTTGAATCGCATCAAGGAGTGGAATAAG 273 0.4505 KPVPFLFLCLAFNLIGIKENGRITKTEVLCNLLRTVIHATPEDLLPVVYLFSCCIAPPHEGLELGIGEPTVLEVVADAYGTALNRIKEWNK 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme475168g00001 91 Pfam DNA ligase N terminus 4 88 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme475168g00001 91 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 89 - -
Trme475168g00001 91 Gene3D - 1 91 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme475168g00001 91 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 2 90 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme475168g00001 Trme-Chr475168 13 285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme475168g00001 3 90 Core DNA Replication Machinery Family AT1G08130 54.545 7.19e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme475168g00001 K10747 - gmx:100783155 104.375