Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme190513g00001 ATGCAGGCAATGCAGGTTTCTCAGAAGCCGCATACACCATCTGCAGAAGTTAACANNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCCAAGCCTAGAATGCGTTGGAGTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTTAACCAGCTTGGTGGTAGTGACAAGGCTACTCCAAAAGGTGTCCTGAATCTGATGAATGTTGAAGG 215 0.3907 MQAMQVSQKPHTPSAEVNXXXXXXXXXXXXXXKPRMRWSPELHEAFVEAVNQLGGSDKATPKGVLNLMNVEG 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme190513g00001 72 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 72 IPR006447 GO:0003677
Trme190513g00001 72 SUPERFAMILY Homeodomain-like 31 71 IPR009057 -
Trme190513g00001 72 MobiDBLite consensus disorder prediction 1 28 - -
Trme190513g00001 72 Gene3D - 32 72 - -
Trme190513g00001 72 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 29 72 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme190513g00001 Trme-Chr190513 1 304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme190513g00001 33 72 G2-like Transcription Factor Family AT4G28610 80.000 6.88e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme190513g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme190513g00001 - - mtr:25499705 97.4413