Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme127301g00001 CTATCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGGGAATACATGGATAACTCATCTATAAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAACAAAAGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTGGCACGCATAGTGATGGCTGCTGCTGCTAAGAACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCACCGGTTATTGTTGATTCAAATTCAAATATCAAC 252 0.4167 LSLDPVIGAIAAGEYMDNSSIRVVEGAVDETSALLQQKWDKIFYTGNGKVARIVMAAAAKNLTPVVLELGGKSPVIVDSNSNIN 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme127301g00001 84 SUPERFAMILY ALDH-like 6 83 IPR016161 GO:0016491
Trme127301g00001 84 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 84 IPR016162 GO:0016491
Trme127301g00001 84 PANTHER ALDEHYDE DEHYDROGENASE 14 82 IPR012394 GO:0006081
Trme127301g00001 84 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 67 74 IPR029510 GO:0016491
Trme127301g00001 84 Pfam Aldehyde dehydrogenase family 19 83 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme127301g00001 Trme-Chr127301 102 605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme127301g00001 1 84 Aldehyde Dehydrogenase Gene Family AT1G44170 57.944 1.88e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme127301g00001 K00128 - psat:127101218 145.976