Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10860g00001 AACTTAACATTTCCTATCGGTATTGTCAAAACGGTCAGACCTGGAGAAGTTTTCGGTGAAACTTGCGTATTTTTCAACACACCACAAGTTTTCACCGCTAAAACTAGAGAATGGAGTCACCTTCTCAGGTTGGATCGAGTTAAACTCATGAGCATTCTTCAAGGCTGCCCAAATGATACATCTCATATGATAAGTGGCCACATTCAGGATTTAAGTGCGAACAACAACAATCCATACATGAATGTTGTGTTGGATTTTGAAAATAGAGCAAGACTTGGTAGGATTGATCTTCCCGTAAGCTTATGGTTTGCGGTCGGTAGAGGATATGGTCTGTTGTTTGATCTACTTGTTGAAAAATATCTAGATGCAAATGAACGTGACAATTTGGGGAGGACAGCTATGCACCTAGCAGCATCAAGTGGAGATGTTGCGAAGGTTAATAAGCTATTTGAAATTGGGGCAGATCCAAATTTAAAGGTACAAGCCTTGAAAGATAAAGGAGTTACTTTACAAGGTTGTCATTTTGGACTGTATGCATGTACTGCGGTTGAGCGAGGCAACATGGATCTGCTACAAACTATTGGCAACATGGATCTGCTACATCTTTCCCTCCCAAATGACGACGGGCAAACAGCACTACATGTGGCTATGGTTCGAGACAACTTTCCTATGGTTCAATATCTCGTGGAAAGTGGTGTACGGATTGATCAAAATGACATTGATGGTAATAGCCCATATGGCCTGGCACAGATACATGGTAGTGAAGAAATTGTAAACTATTTGGAGTTAAGAGCAAGGCTACTTCCGCAAATTATTTAG 819 0.409 NLTFPIGIVKTVRPGEVFGETCVFFNTPQVFTAKTREWSHLLRLDRVKLMSILQGCPNDTSHMISGHIQDLSANNNNPYMNVVLDFENRARLGRIDLPVSLWFAVGRGYGLLFDLLVEKYLDANERDNLGRTAMHLAASSGDVAKVNKLFEIGADPNLKVQALKDKGVTLQGCHFGLYACTAVERGNMDLLQTIGNMDLLHLSLPNDDGQTALHVAMVRDNFPMVQYLVESGVRIDQNDIDGNSPYGLAQIHGSEEIVNYLELRARLLPQII 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10860g00001 272 CDD CAP_ED 8 64 IPR000595 -
Trme10860g00001 272 ProSiteProfiles Ankyrin repeat region circular profile. 129 159 - -
Trme10860g00001 272 Gene3D Jelly Rolls 6 75 IPR014710 -
Trme10860g00001 272 SMART ANK_2a 208 237 IPR002110 GO:0005515
Trme10860g00001 272 SMART ANK_2a 129 158 IPR002110 GO:0005515
Trme10860g00001 272 Gene3D - 85 169 IPR036770 -
Trme10860g00001 272 Gene3D - 178 267 IPR036770 -
Trme10860g00001 272 ProSiteProfiles Ankyrin repeat profile. 129 161 IPR002110 GO:0005515
Trme10860g00001 272 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Trme10860g00001 272 SUPERFAMILY cAMP-binding domain-like 8 71 IPR018490 -
Trme10860g00001 272 ProSiteProfiles Ankyrin repeat region circular profile. 208 239 - -
Trme10860g00001 272 Pfam Ankyrin repeat 130 157 IPR002110 GO:0005515
Trme10860g00001 272 PANTHER POTASSIUM CHANNEL AKT1 9 262 IPR045319 GO:0005249|GO:0006813
Trme10860g00001 272 SUPERFAMILY Ankyrin repeat 101 261 IPR036770 -
Trme10860g00001 272 Pfam Ankyrin repeats (3 copies) 202 261 IPR002110 GO:0005515
Trme10860g00001 272 ProSiteProfiles cAMP/cGMP binding motif profile. 8 70 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10860g00001 Trme-Chr10860 280 1589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10860g00001 7 257 Ion Channels AT2G26650 35.531 6.73e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10860g00001 K21867 - dct:110102489 168.703