Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1148 ATGGCTTCAACTAGTAAAACACCACCAGAAACAAATACAAATGCAGCAAATGCAACAACCACAAAAGACGAAATCAACAACAATAACAAACTCAAATCATTATCAATGAAAAAAGCCATAGCTCAATACACCGAAGACGCAAGACTTCACGCTGTTTTTGAACAATCCGGAGATTCTTTCGACTACACTGAATCGATTCGTGTAACTGCCGCTGCAACTGAATCTGTTCCTGAACAACAAATAACTGCTTATTTAGCTAGAATTCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCAGTTGATGAACCTTCTTTTCGTGTTCTTGCTTATTCTGAAAACGCACGTGATATGCTTGGTATTGCTCCTCAATCTGTTCCTTCTTTAGAAGATCAAGATTCTTTTACTTCTTCTTTTTGTTTAGGTATTGATGTTCGTTCACTTTTTACTAATTCGAGTTCGATTTTGCTTGAGAAAGCTTTCGCGGCTCGTGAAATTAGTTTGATGAATCCTATTTGGATTCATTCTAGATCTACTGGTAAGCCTTATTATGGAATTTTACATCGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCTGCTAGATCTGAGGATCCAGCACTTTCGATTGCTGGTGCTGTTCAGTCTCAGAAGCTAGCTGTTAGAGCGATTTCGCAGCTTCAATCGCTTCCTGGTGGTGATGTTAAGGTTTTATGTGATGCTGTTGTTGAGAGTGTTAGAGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAACATGGGGAAGTTGTTGCTGAGAGTAAGAGGATTGATTTGGAGCCTTATATTGGTTTGCATTATCCTGCTACGGATATACCTCAGGCTTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCACTTGTTCAGCCTGTTTGTTTGGTTGGGAGTACTCTTCGTGCTCCTCACGGTTGTCATGCTCAGTATATGGCGAATATGGGTTCTATTGCTTCTTTGGTTATGGCTGTTATTATTAATGGGAATGATGAAGAGGGTGGTGGGATTGGTGGTACTGGAAGAAGTTCGATGAAACTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGCGAGTTTTTAATGCAGGCTTTTGGGCTTCAATTGAATATGGAACTTCAGTTAGCAGTGCAGTCGTTGGAGAAACGGGTTTTGAGGACACAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATTGTTACGCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGATGGGGCTGCTTTGTTTTATCAGGGAAACTACTATCCGTTGGGTGTTACTCCTACGGAGTCTCAGATAAGGGATATTATAGAGTGGTTGTTGGCCTTCCATGGTGATTCAACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGCTATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTCCTTTTCTGGTTCAGATCTCATACGGCAAAAGAGATTAAATGGGGTGGTGCGAAGCATCACCCAGAGGATAAAGATGATGGTCAGAGAATGCATCCTCGGTCTTCCTTCAAGGCCTTTTTAGAAGTAGTCAAGAGCCGTAGTATGCAGTGGGAGAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATTCTGCGAGACTCATTTAAGGAAGCCGAGAATAACGATTCAAAGGCTGTTGTGCATACTCATATGGCAGAACTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGGGAAATGGTCAGGTTAATAGAAACTGCCACTGCTCCCATATTTGCCGTTGATGTCGAAGGCCGTATCAATGGGTGGAATGCAAAGATTTCTGAATTGACGGGACTTCTGGTAGAGGACGCCATGGGGAAGTCTTTGGTTCATGATCTTGTGTATAAGGAGTCTCAAGAATCTGTGGACAAGCTTCTTTCTCATGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAAGACGTTTGGCCCAGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAGTATAGTTGGAGTGTGCTTTGTTGGTCAAGATGTTACCGGTCAAAAAGTTGTAATGGACAAGTTCATTAACATACAAGGTGACTACAAGGCCATTGTACATAGTCCAAATGCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGTGGTTGGAGCCGTGCAGATGTTATTGGCAAATTGTTGGTGGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATTCTATGACAAAATTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGACACGGACAAATTCCCATTTTCATTTCTTGACCGACATGGAAAGTATGTTCAGACTTTCTTGACCGCAAATAAAAGGGTTAACATTGATGGCCAGATCATTGGCTCTTTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAGACAACAGGATACTAGTAGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACATGCTTGACTGATGAGCAAAAGCAGTTACTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGAAAGCGTCGAGGATGGGTCCCTGGAGCTTGAGAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTAGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTCTATGGTGATCAATTGAGGATTCAACAAGTTTTGGCTGATTTCTTAATGAATGTGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTGTTTCCAAGAATAAAACAAATTTCAGATGGGCTCACTATTCTGCATGCTGAATTTAGGATGGTGTGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATAATAAAATTAATGAATGGTGAAGTCCAATATGTCAGGGAGGCAGAACGGTGCTACTTTTTGGTTTTTCTTGAACTACCTGTGACGCGGAGAAGCCTTAAAAATGTTAATTAG 3429 0.4147 MASTSKTPPETNTNAANATTTKDEINNNNKLKSLSMKKAIAQYTEDARLHAVFEQSGDSFDYTESIRVTAAATESVPEQQITAYLARIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGIAPQSVPSLEDQDSFTSSFCLGIDVRSLFTNSSSILLEKAFAAREISLMNPIWIHSRSTGKPYYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGGGIGGTGRSSMKLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALFYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKISELTGLLVEDAMGKSLVHDLVYKESQESVDKLLSHALKGEEDKNVEIKMKTFGPGNQNKAVFIVVNACSSKDYTNSIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKLLVGEVFGSFCQLKGSDSMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNIDGQIIGSFCFLQIVSPELQQALTVQRQQDTSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLESVEDGSLELEKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVFLELPVTRRSLKNVN* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1148 1142 Pfam His Kinase A (phospho-acceptor) domain 912 971 IPR003661 GO:0000155|GO:0007165
Tpr5g1148 1142 Gene3D - 891 970 - -
Tpr5g1148 1142 Gene3D - 217 579 IPR029016 -
Tpr5g1148 1142 ProSiteProfiles PAS repeat profile. 767 819 IPR000014 -
Tpr5g1148 1142 SUPERFAMILY GAF domain-like 426 604 - -
Tpr5g1148 1142 SMART HisKA_10 908 972 IPR003661 GO:0000155|GO:0007165
Tpr5g1148 1142 CDD PAS 644 715 IPR000014 -
Tpr5g1148 1142 Pfam GAF domain 236 418 IPR003018 GO:0005515
Tpr5g1148 1142 SMART HKATPase_4 1020 1135 IPR003594 -
Tpr5g1148 1142 SMART gaf_1 236 428 IPR003018 GO:0005515
Tpr5g1148 1142 SMART pas_2 766 836 IPR000014 -
Tpr5g1148 1142 SMART pas_2 635 702 IPR000014 -
Tpr5g1148 1142 ProSitePatterns Phytochrome chromophore attachment site signature. 336 345 IPR013516 -
Tpr5g1148 1142 PRINTS Phytochrome signature 151 173 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 251 270 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 336 357 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 448 468 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 533 552 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 566 584 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 636 652 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 655 670 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 729 746 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 PRINTS Phytochrome signature 749 769 IPR001294 GO:0006355|GO:0009584
Tpr5g1148 1142 Gene3D PAS domain 780 890 - -
Tpr5g1148 1142 Gene3D PAS domain 631 755 - -
Tpr5g1148 1142 Gene3D - 971 1137 IPR036890 -
Tpr5g1148 1142 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1020 1130 IPR003594 -
Tpr5g1148 1142 Coils Coil 1135 1142 - -
Tpr5g1148 1142 CDD HATPase_Phy-like 1019 1131 IPR044767 -
Tpr5g1148 1142 Pfam PAS fold 83 203 IPR013654 GO:0006355
Tpr5g1148 1142 Gene3D - 423 596 IPR043150 -
Tpr5g1148 1142 ProSiteProfiles PAS repeat profile. 633 704 IPR000014 -
Tpr5g1148 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 781 883 IPR035965 -
Tpr5g1148 1142 Pfam PAS fold 636 751 IPR013767 GO:0006355
Tpr5g1148 1142 Pfam PAS fold 767 886 IPR013767 GO:0006355
Tpr5g1148 1142 SUPERFAMILY GAF domain-like 216 415 - -
Tpr5g1148 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 207 IPR035965 -
Tpr5g1148 1142 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 908 964 IPR036097 GO:0000155|GO:0007165
Tpr5g1148 1142 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 983 1132 IPR036890 -
Tpr5g1148 1142 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 236 408 IPR016132 -
Tpr5g1148 1142 Gene3D PAS domain 87 339 - -
Tpr5g1148 1142 CDD HisKA 908 964 IPR003661 GO:0000155|GO:0007165
Tpr5g1148 1142 ProSiteProfiles Histidine kinase domain profile. 915 1135 IPR005467 -
Tpr5g1148 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 638 747 IPR035965 -
Tpr5g1148 1142 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 1136 - -
Tpr5g1148 1142 TIGRFAM sensory_box: PAS domain S-box protein 640 754 IPR000014 -
Tpr5g1148 1142 PIRSF Phytochrome_conventional 16 1140 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Tpr5g1148 1142 CDD PAS 778 886 IPR000014 -
Tpr5g1148 1142 Pfam Phytochrome region 431 606 IPR013515 GO:0006355|GO:0009584
Tpr5g1148 1142 MobiDBLite consensus disorder prediction 1 29 - -
Tpr5g1148 1142 PANTHER PHYTOCHROME 21 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1148 Tpr-Chr5 22846315 22852904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1148 10 1133 Histidine Kinase Gene Family AT4G16250 73.121 0.0 1751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1148 K12121 - gmx:100799831 1942.93