Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5028 ATGACTATTTTTGAGAAATCATCAAGTGAAGTTCCTGAGAAGATGGATAAAGAAGAAAATTTAAACAATGGTGAGGATGTTCCTGACATCGAAAACGATGGTAGCTTGAATGGCAATGATGAGGAAATTGGAAGGTATTGGGCGCAGTATTCTGAAAGGAACATGACATATGAAGAACCACTTCTTGTGAAGAGGATTAACACTACCTCTCAGATTGCTATAGTTGGATCCAACCTTTGCCCTATCGAAAGCCTTGACTATGAGATTTTTGATAATGAAATGTTTAACCAGGACTGGAGGTCCAGGAAGAAGGTTCAGATATTCCAATATGTGGTACTTAAATGGGTATTTGCTCTTCTTATTGGAGTAGGAACTGGACTTGTTGGTCTTTTCAATAATATTTCTGTTGAGAACATAGCCGGTTTCAAGCTGCTTCTCACAACCAGTCTCATGTCTAAACAAAGATTTCTTGAGGCTTTTCTAGCATATGCTGGTCTGAATATGGTTTTAGGAGCAGCGGCTGCAGCACTCTGTGCTTTCATTGCGCCATCAGCAGCCGGCTCTGGCATTCCGGAGGTTAAAGCGTATCTCAATGGCATTGATGCTCACTCTATTCTGGCTCCAAACACCCTTTTTGTCAAGATTGTTGGTTCGATCCTTGGAGTGTCAGCTGGATTTGTAGTGGGAAAAGAAGGACCTATGGTTCATACAGGAGCATGCATAGCTTCATTTTTGGGACAGGGCGGATCTCGAAAGTATGGTTTGACTTTCAGTTGGCTTAGGCATTTCAAAAATGATAGAGACCGGCGAGACATGATTACTTGTGGGGCAGCTGCTGGTGTTGCTGCCGCCTTTCGATCTCCAGTAGGCGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCTTGGTGGAGGAGTGCTCTTCTTTGGAGAACATTTTTTACTACAGCAGTAGTTGCTATTGTTTTAAGAGCTGGAATTCAGTTTTGTTCAACGGGAAAATGTGGACTATTTGGTGAAGGCGGTCTTATATTGTATGATGTTGGTTCAGCCCAAGTATCATATAGTGCTGGTGACATATTGGCGGTAATAGTCTTGGGAACTATTGCCGGTATTCTTGGAAGCATATATAATTTCCTTGTCGATAAGGTCGTTCGTACGTATAGCATCATCAATGAAAAAGGTCCATTTTTCAAAATCTCTCTTGCTGTTGCAATTTCTCTTTTGACATCATGCTGCTATTATTTCTTACCATGGATTGCAACCTGTATCCCTTGTCCTTCCGATTCGACGGTGACTTGTCCCTCTATTGACGAGTCTGGAGAATACAAAAGCTTTCAATGTCCACCAGGCTACTACAACGATCTCGCTTCCCTCTTTCTAAACACCAATGACGATGCTATTCGTAATCTATTCAGTCCGAAGATAAACAAAGAGTTTCATATGTCAAGTTTATTTATCTTCTTTGCTGCCGTTTACTTTCTTGGAATACTCACTTATGGTATTGCTGTTCCATCTGGACTTTTCATTCCTGTGATACTTGCCGGAGCTGCTTACGGTCGTGTTCTCAGTAGACTCTTTGAACCAATCACCCAACTCGATCGAGGACTCTTTTCTCTCCTAGGAGCTGCCTCTTTCCTCGGTGGAACCATGAGAATGACAGTCTCAATCTGTGTTATATTACTTGAACTCACTAATGATCTATATTTACTTCCACTTGTGATGTTGGTCTTATTAATCTCGAAATCTGTGGCTGATATTTTCAACAAAGGTGTCTATGATCAAATATTGAAAATCAAAGGACTTCCTTATTTGGAAGCACATGCCGAACCTTACATGAGAAACATAGCTACGCGTGATGTTGTCTCAGGTCCATTAATGGCCTTTTCTGGCATCGAAAAGGTCGGGAATATCTTACATGTTTTGAATACTACAGGGCACAACGGATTTCCGGTCATTGATGAACCGCCTTTCGTGGATGCACCAGAGTTGTGTGGACTCGTACTGAGGTCTTATTTACTAGTTTTACTAAAGGCGAAAAATTTTACAAGTGAGAGGGTTTATGCGGATCAGAGTATCTTAGAAAATATTTCTGTGTTGGATTTTGGAAAGGCAGGATCCGGAAAGGGAGTTAAACTAGAGGACTTAGATATCCAAGATGAAGATTTGGATATGTATGTTGATCTACATCCGATAACTAATACATCTCCGCACACTGTGGTTGAGACAATGTCACTTGCTAAAGCTGCTATTATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCGAAGAGCCAAGGGAGACCTCCAATTGTCGGGATTCTGACGCGCCACGATTTCATGCCTGAACATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA 2400 0.4188 MTIFEKSSSEVPEKMDKEENLNNGEDVPDIENDGSLNGNDEEIGRYWAQYSERNMTYEEPLLVKRINTTSQIAIVGSNLCPIESLDYEIFDNEMFNQDWRSRKKVQIFQYVVLKWVFALLIGVGTGLVGLFNNISVENIAGFKLLLTTSLMSKQRFLEAFLAYAGLNMVLGAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPNTLFVKIVGSILGVSAGFVVGKEGPMVHTGACIASFLGQGGSRKYGLTFSWLRHFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQFCSTGKCGLFGEGGLILYDVGSAQVSYSAGDILAVIVLGTIAGILGSIYNFLVDKVVRTYSIINEKGPFFKISLAVAISLLTSCCYYFLPWIATCIPCPSDSTVTCPSIDESGEYKSFQCPPGYYNDLASLFLNTNDDAIRNLFSPKINKEFHMSSLFIFFAAVYFLGILTYGIAVPSGLFIPVILAGAAYGRVLSRLFEPITQLDRGLFSLLGAASFLGGTMRMTVSICVILLELTNDLYLLPLVMLVLLISKSVADIFNKGVYDQILKIKGLPYLEAHAEPYMRNIATRDVVSGPLMAFSGIEKVGNILHVLNTTGHNGFPVIDEPPFVDAPELCGLVLRSYLLVLLKAKNFTSERVYADQSILENISVLDFGKAGSGKGVKLEDLDIQDEDLDMYVDLHPITNTSPHTVVETMSLAKAAIIFRQHGLRHMCVVPKSQGRPPIVGILTRHDFMPEHVLGLYPDIKHHKWH* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5028 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 46 797 - -
Tpr2g5028 799 MobiDBLite consensus disorder prediction 1 35 - -
Tpr2g5028 799 Gene3D Clc chloride channel 106 604 - -
Tpr2g5028 799 CDD ClC_6_like 83 604 - -
Tpr2g5028 799 MobiDBLite consensus disorder prediction 9 24 - -
Tpr2g5028 799 SUPERFAMILY Clc chloride channel 92 607 IPR014743 -
Tpr2g5028 799 Pfam CBS domain 732 781 IPR000644 -
Tpr2g5028 799 PRINTS Plant CLC chloride channel signature 88 96 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g5028 799 PRINTS Plant CLC chloride channel signature 299 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g5028 799 PRINTS Plant CLC chloride channel signature 313 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g5028 799 PRINTS Plant CLC chloride channel signature 331 338 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g5028 799 PRINTS Plant CLC chloride channel signature 455 471 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g5028 799 SUPERFAMILY CBS-domain pair 608 782 IPR046342 -
Tpr2g5028 799 Pfam Voltage gated chloride channel 171 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 Gene3D - 605 783 IPR046342 -
Tpr2g5028 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 46 797 - -
Tpr2g5028 799 ProSiteProfiles CBS domain profile. 731 793 IPR000644 -
Tpr2g5028 799 PRINTS Chloride channel signature 183 200 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 PRINTS Chloride channel signature 214 233 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 PRINTS Chloride channel signature 278 297 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 PRINTS Chloride channel signature 503 523 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 PRINTS Chloride channel signature 535 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 PRINTS Chloride channel signature 553 572 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 PRINTS Chloride channel signature 591 605 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g5028 799 CDD CBS_pair_voltage-gated_CLC_euk_bac 618 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5028 Tpr-Chr2 56115140 56122320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5028 26 793 Ion Channels AT5G49890 69.909 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5028 K05016 - gmx:100809070 1251.5