Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3489 ATGTGGCCAGAAGATGTTGAAACTGATGTTGGAAAACAGTTCAGCATAGAAAAACCAGGAATGGATCAAGATATTTTGGAAGAAGTAACAATCTTAGATGAACCAATTGTAGCTGATTTTCAAAGAATTGTGGAGCTTACAAATTGTACAAATCAAGGGTCTTTTCAGTTAGCTAATCTCACGAAACATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCAAGAAGAGCTCGACAAACTTAGCAAACAAAGGGAGGAAGTTGAGCTTAAAAACTTGGAGCTTCTTAAAGACAATAATCGATTCGAGGAAGAAAGTTACGGTGGAGACAAATGTCCGGTTTCGATATTGGACGATGTTGTTCAAAACAAGAGAGTTGAAAGTGAGGCCGAGTATGATACCAATGTTTACTGGAAAAATCGGGCGTTCGAATTGGAAAGACAGATGGAGGGAAGTATTCAGAGAGAGGTGATATTAAAGGAAAAGTTGCAAGAAAGTATAGAGACTATTGAAAGACAATCCTCACCTGTGGAGGAACTGTCACAGATTCTTAAGAGAAAAGATAATTTCTTTCATTTTATACTTCAAAATGCACCTTTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTACCGTTTTATCTATAATTATTTTCCAAGTTTACAAGAGGAGGACATCATAGGGAAAACGGAGGATGAAATTTTCACCGGAACAGGCGTGAAGGAATTTCAGGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAAAGAAATAACTTATGAGACAGAACTATTTGGATCAAAGACATTTTTGATGTATGTAGAACCTGTGTTTAGTAAGGCAGGGCAAACAATTGGAGTAAACTATTTGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAAAAATTCAAGGAAATGGAACTTAATAAAACTATTCACATTACAGAGGAGACAATGAGAGCAAAACAAATGGTAGCAACAATGTCTCATGAGATAAGATCTCCACTTTCTAGTGTTGTTAGCATGGCTAAAATTCTTACTACCACAAAACTTGATAGGGAGCACATACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGATATACTTGATCTTTCCAAGGTTGAGTCGGGAGCTATGAAATTGGAAGCTACGAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTGCTCCAAACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAAATATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTAGGCAAATTCTGACAAATTTAGTCAGCAATGCTGTCAAGTTTACAACTCAAGGCAAAGTTGGTATAAACCTTTATGTTATTCCAGAGCCACCATTTTCAGTTAACAGTGAATGCTCAATGAATGATGATACTGAAGATCAAACTCGTTCAACCGAAACAACAGTGTGGATACGATGTGATGTATACGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAAAGACCATACTCAAAAGTATGGAGGCACAGGTCTAGGACTAGCAATGTGTAATCAACTGGTTGAGTTAATGGGGGGTCATTTAACAGTAACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTATCAACAACCTGTGATAATTCTGATAAGGATGAGCTTTCGGATGTTGATAACAATGACGATGACACAACCGAGGGATTCTTCCAATTCCCTCCAGAAACTTTGGGATCTCCTTACACTTCTAATGGATCCAGTGTGATGAGATCCTAA 1884 0.3779 MWPEDVETDVGKQFSIEKPGMDQDILEEVTILDEPIVADFQRIVELTNCTNQGSFQLANLTKHWEYKQANAVRLLQEELDKLSKQREEVELKNLELLKDNNRFEEESYGGDKCPVSILDDVVQNKRVESEAEYDTNVYWKNRAFELERQMEGSIQREVILKEKLQESIETIERQSSPVEELSQILKRKDNFFHFILQNAPFVIGHQDKELRYRFIYNYFPSLQEEDIIGKTEDEIFTGTGVKEFQDFKREVMEKGIPAKKEITYETELFGSKTFLMYVEPVFSKAGQTIGVNYLGMEITDQVRKRERMAKLREEIAVQKFKEMELNKTIHITEETMRAKQMVATMSHEIRSPLSSVVSMAKILTTTKLDREHIQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGNIADDIPIEVTGDVLRIRQILTNLVSNAVKFTTQGKVGINLYVIPEPPFSVNSECSMNDDTEDQTRSTETTVWIRCDVYDTGIGIPEKAIPTLFRKDHTQKYGGTGLGLAMCNQLVELMGGHLTVTSKEHCGSTFTFILPYKVSTTCDNSDKDELSDVDNNDDDTTEGFFQFPPETLGSPYTSNGSSVMRS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3489 627 PRINTS Bacterial sensor protein C-terminal signature 510 524 IPR004358 GO:0016310|GO:0016772
Tpr1g3489 627 PRINTS Bacterial sensor protein C-terminal signature 539 557 IPR004358 GO:0016310|GO:0016772
Tpr1g3489 627 PRINTS Bacterial sensor protein C-terminal signature 563 576 IPR004358 GO:0016310|GO:0016772
Tpr1g3489 627 Coils Coil 154 174 - -
Tpr1g3489 627 Gene3D PAS domain 179 314 - -
Tpr1g3489 627 SMART HKATPase_4 448 579 IPR003594 -
Tpr1g3489 627 ProSiteProfiles Histidine kinase domain profile. 344 579 IPR005467 -
Tpr1g3489 627 Pfam His Kinase A (phospho-acceptor) domain 339 402 IPR003661 GO:0000155|GO:0007165
Tpr1g3489 627 SMART HisKA_10 337 402 IPR003661 GO:0000155|GO:0007165
Tpr1g3489 627 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 490 - -
Tpr1g3489 627 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 498 624 - -
Tpr1g3489 627 MobiDBLite consensus disorder prediction 586 627 - -
Tpr1g3489 627 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 336 402 IPR036097 GO:0000155|GO:0007165
Tpr1g3489 627 MobiDBLite consensus disorder prediction 612 627 - -
Tpr1g3489 627 CDD HisKA 336 398 IPR003661 GO:0000155|GO:0007165
Tpr1g3489 627 Gene3D - 328 402 - -
Tpr1g3489 627 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 448 577 IPR003594 -
Tpr1g3489 627 Gene3D - 403 584 IPR036890 -
Tpr1g3489 627 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 391 579 IPR036890 -
Tpr1g3489 627 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 490 - -
Tpr1g3489 627 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 498 624 - -
Tpr1g3489 627 Coils Coil 72 106 - -
Tpr1g3489 627 CDD HATPase_EvgS-ArcB-TorS-like 453 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3489 Tpr-Chr1 39098307 39103356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3489 1 624 Histidine Kinase Gene Family AT5G10720 63.020 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3489 - - gmx:100801640 951.429