Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93257g00001 ATGGAGTTGTATGACCATGATTTCTTGGATGAGTTATTGTCACAAAGAAGAGAAACATGGGAATGCACAAATAATTATCCATGTGATGAAGAAGAAAACTACCAATTACTCTTCTCATCAAATAATAATGGGTGGAGTAATGGTAATAATGGTAGTAGTTTTGATCATCAAAATTATTCATCACCCTCTTCTCTTCTTGTTCAAAATTCCTCTTATTTTCGTTCTTCTTCTTATCAAGAAGTTCCTCAAAATTGCAATGACTACTATTGTAGCACTACCTTCAATGAAATCTATAGTTCCTTGCTTGAAGAATTCTCAGCTCCACAGATCAATAGTGACACTACTACTACTACTCCACCAACATTATTGATGACTCATCGTCATCAAGAAGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGACAATCCATTATTGGTGTCTATGATGATGGAAAAAGAGTTTCAAAGTTTGGAGATGCAAAGAGAGTGCAAAACGGAGCCAAGTCAATCATCTTCTCCGGTTTTCAACTCAGAAAGAAAGAACGACAACAATCATCATAATAAAAACAATAGAGTAGCAAAGAAAATTGAGGGCCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGGAAGAGATTGAATGATAGGCTCTCCATGCTTAGATCAATTGTCCCCAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACCATTGATTACATGAAGGAACTACTAGACAAGATCAACACTTTAAAACAACAAATACAAGTGGCGGATGATGATTATTCAAATAATGGCATTTTATTCAATGGCATACACCCAAATGATATCTTTGTGAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGGAATAATAATGGAGACACAAGGGTTGAGATCTGTTGTGGTGGGAAGCCAGGGCTGTTGCTATCTACAGTGAACACCTTGGAAGCATTGGGGCTTGAGATTCAACACTGTGTTATAAGCTGTTTCAATGACTTCACAATGCAAGCTTCTTGCTCAGAGGAATTGGAGGAGAAGACAGTGGTGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAACTGCAGGATATGGAGGAAGATGTTTCTGA 1140 0.3614 MELYDHDFLDELLSQRRETWECTNNYPCDEEENYQLLFSSNNNGWSNGNNGSSFDHQNYSSPSSLLVQNSSYFRSSSYQEVPQNCNDYYCSTTFNEIYSSLLEEFSAPQINSDTTTTTPPTLLMTHRHQEDNNNNNNNNNNNNNNNDNPLLVSMMMEKEFQSLEMQRECKTEPSQSSSPVFNSERKNDNNHHNKNNRVAKKIEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINTLKQQIQVADDDYSNNGILFNGIHPNDIFVRNSPKFDVERRNNNGDTRVEICCGGKPGLLLSTVNTLEALGLEIQHCVISCFNDFTMQASCSEELEEKTVVSSEDIKQALFRTAGYGGRCF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93257g00001 379 Coils Coil 250 270 - -
Stsc93257g00001 379 MobiDBLite consensus disorder prediction 185 213 - -
Stsc93257g00001 379 MobiDBLite consensus disorder prediction 167 184 - -
Stsc93257g00001 379 Pfam Helix-loop-helix DNA-binding domain 210 253 IPR011598 GO:0046983
Stsc93257g00001 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 266 IPR036638 GO:0046983
Stsc93257g00001 379 SMART finulus 210 259 IPR011598 GO:0046983
Stsc93257g00001 379 CDD ACT_UUR-ACR-like 305 346 - -
Stsc93257g00001 379 MobiDBLite consensus disorder prediction 163 213 - -
Stsc93257g00001 379 Gene3D - 187 269 IPR036638 GO:0046983
Stsc93257g00001 379 MobiDBLite consensus disorder prediction 126 149 - -
Stsc93257g00001 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Stsc93257g00001 379 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 109 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93257g00001 Stsc-Chr93257 2792 5131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93257g00001 178 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.901 3.15e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc93257g00001 HLH 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93257g00001 - - gmx:100814388 353.214