Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92781g00001 ATGGAACCACTTACTTCAACTGACGAAACCGCCACATCCAGCGACTCACTTTCCATAACCCTATCACCGGCTAAACTCTCACCTCCCCCTCCGCCGACAACCACCGCCGAGATTGAGTCCCGGAAGTTACCCTCCTCCAAGTACAAAGGCGTGGTGCCGCAGCCCAACGGCCGCTGGGGCGCACAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGCACCTTCAACGAGGAGGACGAGGCCGCCAGGGCTTATGACATCGCCGCCGTTAGGTTCCGCGGCAAGGACGCAGTCACCAACTTCAAGCACCTCGCCGTCGCCGACGGCGACTCCGACGAGTCTGACGACGGCTCAGAAGCCGAGTTTCTGAACTCCCATTCCAAGTCCGAGATCGTGGATATGCTGAGGAAGCACACCTACGAGGACGAGCTCCGTCAGAGCAAGAGAGATGGCGCGTGCGGAGGAAGGAATCACCGACGAGGCCGCGGTGACAACACCGACGCGTCGTCCTTCGGTTCTGAAGGCGCGTGGGAAGTTCGCGCGCGTGAACAGCTTTTCGAGAAAACGGTTACGCCTAGCGACGTTGGGAAACTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTACAGGGAAACGGTTGTGCCGCAGCAGCAAAAGGAGTGCTGTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTCACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAGCCTCCGGGCTGGCGATTCGGTTCAGTTTTACCGGTCCAGCGGACCGGACGGACAGCTGTACATTGACTGCAAGGCAAGGATGGGTAGTGGTAGCGTTGTAAATAATGATAGACCTAATAATAAAAATGATCATGATGATGATGATAACAGAAATAACGGTTTGTTGATTCCGGTTGGACCGGTGGTTGAGCCAGTACAGATGGTTCGGCTTTTCGGGGTCAACCTTTTGAAGCTTCCTGGCTCCGATGGGGTTGGTGTTGGTGTTGGCGGTGGATGCAATGGGAAGAGGAAAGAGATGGGCGTGTTTTCATTAGAATGCAGCAAGAAGCCAAAGATTATTGGAGCTTTGTAA 1146 0.5471 MEPLTSTDETATSSDSLSITLSPAKLSPPPPPTTTAEIESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAVRFRGKDAVTNFKHLAVADGDSDESDDGSEAEFLNSHSKSEIVDMLRKHTYEDELRQSKRDGACGGRNHRRGRGDNTDASSFGSEGAWEVRAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQGNGCAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDSVQFYRSSGPDGQLYIDCKARMGSGSVVNNDRPNNKNDHDDDDNRNNGLLIPVGPVVEPVQMVRLFGVNLLKLPGSDGVGVGVGGGCNGKRKEMGVFSLECSKKPKIIGAL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92781g00001 381 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Stsc92781g00001 381 Gene3D - 176 298 IPR015300 -
Stsc92781g00001 381 CDD B3_DNA 185 286 IPR003340 GO:0003677
Stsc92781g00001 381 SMART B3_2 186 291 IPR003340 GO:0003677
Stsc92781g00001 381 FunFam AP2 domain-containing protein RAP2.8 46 103 - -
Stsc92781g00001 381 SMART rav1_2 47 108 IPR001471 GO:0003700|GO:0006355
Stsc92781g00001 381 SUPERFAMILY DNA-binding pseudobarrel domain 185 289 IPR015300 -
Stsc92781g00001 381 MobiDBLite consensus disorder prediction 296 317 - -
Stsc92781g00001 381 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 42 354 IPR044800 GO:0003700
Stsc92781g00001 381 Pfam B3 DNA binding domain 186 286 IPR003340 GO:0003677
Stsc92781g00001 381 MobiDBLite consensus disorder prediction 145 174 - -
Stsc92781g00001 381 ProSiteProfiles B3 DNA-binding domain profile. 186 292 IPR003340 GO:0003677
Stsc92781g00001 381 Pfam AP2 domain 46 94 IPR001471 GO:0003700|GO:0006355
Stsc92781g00001 381 ProSiteProfiles AP2/ERF domain profile. 47 102 IPR001471 GO:0003700|GO:0006355
Stsc92781g00001 381 MobiDBLite consensus disorder prediction 145 165 - -
Stsc92781g00001 381 MobiDBLite consensus disorder prediction 1 23 - -
Stsc92781g00001 381 MobiDBLite consensus disorder prediction 1 57 - -
Stsc92781g00001 381 Gene3D AP2/ERF domain 46 103 IPR036955 GO:0003700|GO:0006355
Stsc92781g00001 381 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92781g00001 Stsc-Chr92781 4726 6538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92781g00001 5 381 B3 DNA Binding Superfamily AT1G25560 52.195 2.27e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Stsc92781g00001 B3 8.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92781g00001 K09287 - gmx:100789009 457.988