Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91942g00002 ATGAAGCGCGAGTTCTATGAAATCTCCGACGACGAATGGGACCAACATGAACAACACTTCAAGCCCTCTCGAGTTCTCAAGAGACCCAACACCACTCCTCCTATCGAGTCCTTCGCTTTCAACAACAACAACAATAATAATAACAATACCCTTCGAATTTCCGCCGACGACGAAGACGACGACGATTGCGTTGAAATCACTCGCCCTTCTCCCGCTTTTCCGGACGAATTGGACGACTTGGAGGATGCTGACGTGGATAACAACAACAATCCTGCTGCAGCACCCGCCCCGAATCGCGGCCGTCGGTTCATCATCGACGACGACGAGGAAGAGGAAGAAGAGGAAAGTAATAGGGATAGGAATAGGAATGTTGCGGAGTTGTATGAAATAGGATCATCTTCTTCGGAGGAAATTGAGGAAGATGGGATTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCTAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGATCTTCGGGAACAGCATGCGATAGGTATTCCGAAGTGGAGTCTTCTTCAGTTAGGATCGTCACTCAGGATGATGTAGATGTTGCGTGTGGGCATGAGGATTCGGATTTTCAGCCTCTACTGAAGCCGTATCAGCTGGTTGGTGTCAATTTTTTGCTTCTATTGTATCGGAAGCGGATTGGTGGAGCCATATTGGCAGATGAAATGGGCCTGGGCAAAACAGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAACTAAAGAAGTGGTGCCCATCATTTTCTACTCTTCAATACCATGGGGCAGGACGAACAACATATTGCAAGGAGTTGAACTCCCTCTCAAAGGCAGGGTTGCCTCCTCCATTTAACGTTCTTCTTGTGTGTTATTCTCTTTTTGAACGTCACAGTGCACAGCAGAAAGATGACCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCGTGCTGATGGATGAAGCTCATGCTTTGAAGGACAGAAATAGCTTTAGGTGGAAGAATCTGATGGCTGTTGCACGGAATGCAAACCAACGATTGATGTTGACCGGGACACCACTTCAGAACGATTTACATCAGCTTGTTCCCAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTCTCTCAAGCTCGGATAGCCAAGTGCTCTGAGCTTAACTCTAAATCTGTTCTTGAAACTCTTCCACGACGGCAAATAAATAACTACTTTGTTCAGTTTCGAAAGATTGCAAACCATCCCTTGCTGATACGGAGAATCTATAGTGATGACGATGTCATTCGCTTTGCAAGGAAGTTGCATCCAATGGGTGCTTTTGGTTTTGAATGTACTTTAGACAGAGTTATAGATGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCACTATGGTGTCAAGGATAAAAAGGGGATACTTGCTGAAAACCATGTTATGCTTTCTGCAAAATGTCGGGCCTTGGCAGGGCTTCTTCCTTCACTAAAGAAGGATGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGACATATTGGAGTGGACCTTAGATGTCATTGGGTTGACCTACAAACGGCTCGATGGAAGCACACAGGTGGCCGAAAGGCAAACAATAGTTGATACATTCAACAACAATACTTCCATTTTTGCATGCTTGCTATCAACAAGAGCCGGAGGACAAGGTTTGAACTTAACTGGAGCTGACACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCCGAAGATCGTTGTCATAGAATTGGTCAAACTAAGCCTGTAACCATATACCGGCTGGTAACTAGGGGAACAGTTGATGAAAATGTATATGAGATTGCGAAGAGAAAGTTGGTACTCGATGCTGCTGTCCTCGAGTCCATGGAGGTGGTTAGCGAAGGCGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTGTTGAGTACTTGA 2118 0.4462 MKREFYEISDDEWDQHEQHFKPSRVLKRPNTTPPIESFAFNNNNNNNNNTLRISADDEDDDDCVEITRPSPAFPDELDDLEDADVDNNNNPAAAPAPNRGRRFIIDDDEEEEEEESNRDRNRNVAELYEIGSSSSEEIEEDGIMEGDVVGRALHKCAKISAELKGELFGSSGTACDRYSEVESSSVRIVTQDDVDVACGHEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSFSTLQYHGAGRTTYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDRNSFRWKNLMAVARNANQRLMLTGTPLQNDLHQLVPKIQQVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSELNSKSVLETLPRRQINNYFVQFRKIANHPLLIRRIYSDDDVIRFARKLHPMGAFGFECTLDRVIDELKSYNDFSIHRLLLHYGVKDKKGILAENHVMLSAKCRALAGLLPSLKKDGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEVVSEGDMPEKTMGEILSAILLST 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91942g00002 705 Gene3D - 191 448 IPR038718 -
Stsc91942g00002 705 CDD SF2_C_SNF 528 654 - -
Stsc91942g00002 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 392 IPR027417 -
Stsc91942g00002 705 PANTHER SNF2/RAD54 HELICASE FAMILY 388 680 - -
Stsc91942g00002 705 MobiDBLite consensus disorder prediction 17 48 - -
Stsc91942g00002 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 400 IPR014001 -
Stsc91942g00002 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 684 IPR001650 -
Stsc91942g00002 705 MobiDBLite consensus disorder prediction 69 102 - -
Stsc91942g00002 705 MobiDBLite consensus disorder prediction 34 48 - -
Stsc91942g00002 705 Gene3D - 514 698 IPR027417 -
Stsc91942g00002 705 FunFam Protein CHROMATIN REMODELING 19 isoform A 180 450 - -
Stsc91942g00002 705 SMART helicmild6 560 643 IPR001650 -
Stsc91942g00002 705 SMART ultradead3 205 417 IPR014001 -
Stsc91942g00002 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 685 IPR027417 -
Stsc91942g00002 705 Pfam Helicase conserved C-terminal domain 531 643 IPR001650 -
Stsc91942g00002 705 Pfam SNF2-related domain 227 391 IPR000330 GO:0005524|GO:0140658
Stsc91942g00002 705 CDD DEXHc_Snf 209 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91942g00002 Stsc-Chr91942 6783 12644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91942g00002 523 685 RAD5 or RAD16-like Gene Family AT5G22750 37.423 2.44e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc91942g00002 SNF2_N 3.6e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91942g00002 K14439 - gmx:100806323 1115.52