Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90633g00004 ATGTTTCCCATCAATAACGACACACGTCCGACTACCTCCTCTGTCTCTGAGGGGGAGGTGGTGCTGGCGGCCACCCGCCCCAAGAAGAGAGCGGGGAGGAAAAAGTTCAGGGAGACGCGCCACCCTGTGTACCGCGGCGTGCGAAGGAGGAACTCCGGCAAGTGGGTTTGCGAGGTAAGGGAGCCAAACAAGAAGACCAGGATATGGCTAGGGACCTTCGCAACTGCAGACATGGCAGCGCGTGCGCACGACGTCGCTGCTATCGCTCTCAGGGGGAGGTCTGCCTGCCTCAACTTCGCAGACTCTGCATGGCGCCTCCCCGTGCCGGAGACTGCAGACGCCAGAGATATCCAGAAGGCTGCGGCGGAGGCAGCTGAGGCCTTCCGCCCAGTAACGGAGTTGGAAAGTGATGAAGTGAGGCGGGAGGGGGTGGAGGTGGCGTCAGAGACGACGAAGATGGTGGCGGCATCGGAAGAGCAAGAAGAAGGGGTGCCGGAGATGTGGAGGACGATGGCGTTGATGTCTCCAACACATTACTGTGTGAGTGAGTATGGCCTTGATGACGTGGATTTTGATGATGTCGAAGTCTCCTTGTGGACTTATTCCATTTAA 612 0.585 MFPINNDTRPTTSSVSEGEVVLAATRPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFATADMAARAHDVAAIALRGRSACLNFADSAWRLPVPETADARDIQKAAAEAAEAFRPVTELESDEVRREGVEVASETTKMVAASEEQEEGVPEMWRTMALMSPTHYCVSEYGLDDVDFDDVEVSLWTYSI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90633g00004 203 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Stsc90633g00004 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 201 IPR045277 GO:0003700
Stsc90633g00004 203 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Stsc90633g00004 203 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Stsc90633g00004 203 MobiDBLite consensus disorder prediction 1 36 - -
Stsc90633g00004 203 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Stsc90633g00004 203 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Stsc90633g00004 203 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Stsc90633g00004 203 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Stsc90633g00004 203 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Stsc90633g00004 203 PIRSF PTI6 107 198 IPR017392 GO:0003700
Stsc90633g00004 203 PIRSF PTI6 11 125 IPR017392 GO:0003700
Stsc90633g00004 203 MobiDBLite consensus disorder prediction 1 19 - -
Stsc90633g00004 203 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90633g00004 Stsc-Chr90633 54085 54696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90633g00004 6 201 AP2-EREBP Transcription Factor Family AT5G51990 55.660 4.54e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90633g00004 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90633g00004 - - lang:109344916 236.113