Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00015 ATGGAAATGCTCAACACCTCCTCCATCTACAACCACACACTACCTTCTCCTTCTCATTACAGCAACTTCCTCTATGCCATTGCCAACGGGATCACTGACGGTGACGGACTCAACACTAGTACCCAAATCATGGTCATGGATCATAACAAAATGCCCCAACAACAACATCTTTCCTCCATCATTCCCGCCACCGCCCTCCCCAAGCTCGAACCATTTTCCCAGATCGACACTAGAAATGATCATCATGAACAACGCGCCTTCTTTCGGGATCACAAAACCATTGCTGCTGATTTCTCCTCTGCCAAAGCCAACAAGGTTGTTGGCCAGCGAACTTCAATATACAGAGGTGTTACCAGACACAGGTGGACAGGACGATATGAAGCTCACCTATGGGATAATAGCTGCCGACGACAGGGTCAAACCAGGAAACGCCGTCAAGTAAAATGTGGTGGTTTGTCAGGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCCTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACAGCTACCACTAACTTCCCTGTTTCCAATTACACCAAGGAATTGGAGGAGATGAAAGATGTGGGGAAGCTTGAATTTATTGCATCACTGCGAAGGAGAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCATCATCAACAAGGTAGATGGCAAGCGAGAATAGGCCGCGTCGCAGGGAACAAAGATATATACCTAGGAACATTTGCAAATGAAGAGGAAGCGGCAGAGGCATACGATATTGCGGCCATAAAGTTCAGAGGCTTAAATGCAGTAACCAATTTTGAGATGAGTCGGTACAACGTGGAAGCCATCATGAATAATTCCCTTCCCATTGGCAGGGGCAGGGCAGCCAAACGCTTGAAGCTTTCCCTACAATCTGAGGAGGAAGAAGCTGCTGCTACTCAGCCACCGCCACCTCCTACACCGTTTGATTCTGTAACACCATATTACCACCAATTTCATCCCACCCATGCCGTTAATGGCACCTCGAAATCAGCTATGGCCAATGTAACTGCAGCTCCAGCATCAACTGAGTTCTATATGTAG 1092 0.478 MEMLNTSSIYNHTLPSPSHYSNFLYAIANGITDGDGLNTSTQIMVMDHNKMPQQQHLSSIIPATALPKLEPFSQIDTRNDHHEQRAFFRDHKTIAADFSSAKANKVVGQRTSIYRGVTRHRWTGRYEAHLWDNSCRRQGQTRKRRQVKCGGLSGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKDVGKLEFIASLRRRSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDIYLGTFANEEEAAEAYDIAAIKFRGLNAVTNFEMSRYNVEAIMNNSLPIGRGRAAKRLKLSLQSEEEEAAATQPPPPPTPFDSVTPYYHQFHPTHAVNGTSKSAMANVTAAPASTEFYM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00015 363 SMART rav1_2 219 283 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 SMART rav1_2 113 189 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 SUPERFAMILY DNA-binding domain 112 185 IPR016177 GO:0003677
Stsc60459g00015 363 MobiDBLite consensus disorder prediction 306 329 - -
Stsc60459g00015 363 SUPERFAMILY DNA-binding domain 218 279 IPR016177 GO:0003677
Stsc60459g00015 363 PRINTS Ethylene responsive element binding protein signature 259 279 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 ProSiteProfiles AP2/ERF domain profile. 219 277 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 319 - -
Stsc60459g00015 363 CDD AP2 218 279 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 Pfam AP2 domain 219 269 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 Pfam AP2 domain 113 175 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 Gene3D AP2/ERF domain 113 185 IPR036955 GO:0003700|GO:0006355
Stsc60459g00015 363 Gene3D AP2/ERF domain 219 279 IPR036955 GO:0003700|GO:0006355
Stsc60459g00015 363 CDD AP2 112 185 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 ProSiteProfiles AP2/ERF domain profile. 113 183 IPR001471 GO:0003700|GO:0006355
Stsc60459g00015 363 FunFam AP2-like ethylene-responsive transcription factor 218 279 - -
Stsc60459g00015 363 FunFam AP2-like ethylene-responsive transcription factor ANT 112 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00015 Stsc-Chr60459 72355 75130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00015 105 303 AP2-EREBP Transcription Factor Family AT1G51190 79.500 2.07e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc60459g00015 AP2 2.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00015 K09285 - gmx:100775390 353.984