Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30667g00004 ATGGGTGGCAGCAATGGTGGAACCTTCCCTTGTGACTCATCAGAAGAGTTCTCAGCTTTGTTCAACCAACTACTCTCTCCACCACCTCAAATGCCACCCGGGTCGGGTTTTCCACCACAACCCGGCCTAACAAACCGGGTTCTTGGTCCTTCTTCTTCTACTTCTGTTTCTTCCTCTGCTTTCCATTTCTCTTCTTCTTCTCTTCATTATGATGATGATGATGATGAAGGTGATCCCTTTCTTGATCACAATCCTAATAACAACAACAATAATAACAATAATGGTAATGACGATTATATCCCTGCACCTCTTCATGACTCTGACGATGCTAACAACAACACAAGGCAATATCGTCACCCCATTGAGAAGGATGGTGAGAGTTCTGAGTTGCCATCAAGGCATGCCCCACCACCACGTACTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTATCTGAAAAGAGAAGGAGGAGTAGGATTAATGAAAAGATGAAGGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGCTTGATGAGGCTATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTACATCCTATGTCATTGCCTGGAGGATTGAGACCTATGATACTGCCACAAACCAGCGTGGATTTTGACGACGGTAACAGATTTCATAATTCTATCGGCGGCGGAGGCGGGGCTCCATCATATACAGCCGACGAAGGCTTGGTGGCGCGACCTCCTTTTGGTTTTCACAGACCATGCAGCATCTCAAACCAATCTGTTGGCATGCCATCATTGACAAACGTAGCTACTTCAGATAATTCATCAAGCTTCCAATCCTCTATGAAGGATGCACACTGCAGCAACATGTCACAGCTTCTTTTGGATTCAACAAGGGTCGGAAAAAACCCATCCCCAGATGTGTCTTAA 972 0.4372 MGGSNGGTFPCDSSEEFSALFNQLLSPPPQMPPGSGFPPQPGLTNRVLGPSSSTSVSSSAFHFSSSSLHYDDDDDEGDPFLDHNPNNNNNNNNNGNDDYIPAPLHDSDDANNNTRQYRHPIEKDGESSELPSRHAPPPRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPQTSVDFDDGNRFHNSIGGGGGAPSYTADEGLVARPPFGFHRPCSISNQSVGMPSLTNVATSDNSSSFQSSMKDAHCSNMSQLLLDSTRVGKNPSPDVS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30667g00004 323 MobiDBLite consensus disorder prediction 45 66 - -
Stsc30667g00004 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Stsc30667g00004 323 SMART finulus 152 201 IPR011598 GO:0046983
Stsc30667g00004 323 MobiDBLite consensus disorder prediction 82 98 - -
Stsc30667g00004 323 FunFam Basic helix-loop-helix transcription factor 141 204 - -
Stsc30667g00004 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 206 IPR036638 GO:0046983
Stsc30667g00004 323 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 306 IPR031066 -
Stsc30667g00004 323 Pfam Helix-loop-helix DNA-binding domain 150 196 IPR011598 GO:0046983
Stsc30667g00004 323 MobiDBLite consensus disorder prediction 144 158 - -
Stsc30667g00004 323 MobiDBLite consensus disorder prediction 111 130 - -
Stsc30667g00004 323 Gene3D - 141 205 IPR036638 GO:0046983
Stsc30667g00004 323 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30667g00004 323 MobiDBLite consensus disorder prediction 1 158 - -
Stsc30667g00004 323 CDD bHLH_AtPIF_like 146 208 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30667g00004 Stsc-Chr30667 18286 21124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30667g00004 146 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 83.133 2.25e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30667g00004 HLH 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30667g00004 - - gmx:100785332 265.003