Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30616g00002 ATGGGAAGGAGTCCTTGTTGTTCAAAGGAAGGTTTGAACAAAGGAGCATGGACAGCTATGGAAGACAAAATTCTCACTGACTACATTAACATTCATGGTGAAGGCAAATGGAGACACTTGCCCAAAAGAGCAGGGCTTAAAAGATGTGGGAAAAGTTGCAGGCTGAGGTGGTTGAATTATCTAAGACCAGGCATCAAAAGAGGAAATATTACTAACGATGAAGAAGACCTTATCATCCGACTTCACAACCTTCTCGGAAACAGGTGGTCCTTAATTGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAATACAAATATTGGTAGGAGGCTTCAAAATGGCACTACCCAAAATTGTTCATCATCAACCTTGCTCCAACCGGATCCGAACCCGAAACCGAAACCGAAAACCCGGGAATGGAATTACCTACAAAATAATATTAGTTCTTGTTTGGTTCAAACTAAAGCCACAAGGTGGCCTAATAATAATAAGGTCATACTCACCAAAGAAATTACAAAACAAAATGATGATCAAGCCAACAATGATCATAATCATCACATTAATCATAATAATAGTGATGATGCTAATAATGTCACTGGTTACAAGACGAAGGGTTCATCGTCATCTTCACAGAGTAATAACAACAAAAGCACCGACGAAGAGTTGGATTTCATGGCTGATTTTCAAATGATGGAGGGAAATAATATTTATTCGGAGCTTTTCAAGATGGACTTTGCAGAATCATCGTCGTGTTTGGAAAATAACATGTTGGAAGGAAGTCTTAATAATAATAATAATAATAATAATAATCCTTTATATCCAAAATTATCATTCAATGACGACAACACCACCAACGTTAACGAGTACAGCCATTTCCATGGGCCATCTTCTTGGGCTGATTCATTATTGTATGATACGGATTTTGATTTTCAGCCCATGGCAACTTTTATGGAGTCTGGATTTGACTGGCTTTGA 990 0.3818 MGRSPCCSKEGLNKGAWTAMEDKILTDYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRRLQNGTTQNCSSSTLLQPDPNPKPKPKTREWNYLQNNISSCLVQTKATRWPNNNKVILTKEITKQNDDQANNDHNHHINHNNSDDANNVTGYKTKGSSSSSQSNNNKSTDEELDFMADFQMMEGNNIYSELFKMDFAESSSCLENNMLEGSLNNNNNNNNNPLYPKLSFNDDNTTNVNEYSHFHGPSSWADSLLYDTDFDFQPMATFMESGFDWL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30616g00002 329 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Stsc30616g00002 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30616g00002 329 MobiDBLite consensus disorder prediction 118 132 - -
Stsc30616g00002 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc30616g00002 329 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 242 - -
Stsc30616g00002 329 CDD SANT 16 61 IPR001005 -
Stsc30616g00002 329 Gene3D - 14 66 - -
Stsc30616g00002 329 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc30616g00002 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc30616g00002 329 MobiDBLite consensus disorder prediction 181 195 - -
Stsc30616g00002 329 Gene3D - 70 144 - -
Stsc30616g00002 329 SMART sant 13 63 IPR001005 -
Stsc30616g00002 329 SMART sant 66 114 IPR001005 -
Stsc30616g00002 329 MobiDBLite consensus disorder prediction 118 143 - -
Stsc30616g00002 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30616g00002 329 CDD SANT 71 112 IPR001005 -
Stsc30616g00002 329 MobiDBLite consensus disorder prediction 196 223 - -
Stsc30616g00002 329 FunFam MYB-related transcription factor 13 66 - -
Stsc30616g00002 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc30616g00002 329 MobiDBLite consensus disorder prediction 181 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30616g00002 Stsc-Chr30616 10452 12875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30616g00002 1 116 MYB Transcription Factor Family AT4G09460 75.000 2.81e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30616g00002 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30616g00002 K09422 - gmx:100809225 324.324