Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272279g00001 ATGAAATCATCCGAGGAGAGTAGGAAACAGGTGAAGAAGCCAGCACAAGCCAGCTCCAGAAAGGGCTGTATGAGAGGGAAAGGTGGCCCTGAGAATGCCAGCTGTACCTATAAGGGTGTGAGGCAGCGAACATGGGGCAAATGGGTGGCTGAGATCCGTGAACCCAACCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAAACCTCTCATGAAGCTGCTCTTGCTTATGATGCTGCTGCTCGTAAGCTCTATGGCCCTGATGCTAAGCTTAATCTCCCTCATCACCATCATCATTCTTCTTCTTCTTCTTCCTCTCCTCCTCCTCCTCCTCATAATTCCCCCAAAATCCAACAAAACAACCCAGTTAATAATATTATTACCACCCCTGCCACCGCAACCGCAACACCACCACCACCACAACCACTTATCAATACAGCATCCTCCATGGTGGTGGCCTCTATTCAGCAAGTTGGACCACCAATATACACCACTGATGCCTCCTCCATTGTATCCTCGTCCCTTTCAAACAATAATAATGGCTATGGAATAATGGAGAACAACAACAACAATAATAATAATAATAACAACAACAATAATAATGATGATAATAATGAGGAAGAAGTTGCTCGACCATTCTGGGGATCAATGAATGATTCTTTGCCTGTGTTTGATGAATCAATCTGGACAGAAGCAACCATGTCCCTTGATTTCCCTGTAATTGCTGCTGCTGAGGCTGCCACTGGGATAATCCCAAACTCCAACATGGCAGATGTTGGTGTTTGGGACACTCCATGGTGCATGTAA 804 0.4602 MKSSEESRKQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGPDAKLNLPHHHHHSSSSSSSPPPPPHNSPKIQQNNPVNNIITTPATATATPPPPQPLINTASSMVVASIQQVGPPIYTTDASSIVSSSLSNNNNGYGIMENNNNNNNNNNNNNNNDDNNEEEVARPFWGSMNDSLPVFDESIWTEATMSLDFPVIAAAEAATGIIPNSNMADVGVWDTPWCM 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272279g00001 267 MobiDBLite consensus disorder prediction 183 205 - -
Stsc272279g00001 267 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Stsc272279g00001 267 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Stsc272279g00001 267 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Stsc272279g00001 267 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Stsc272279g00001 267 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Stsc272279g00001 267 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Stsc272279g00001 267 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Stsc272279g00001 267 MobiDBLite consensus disorder prediction 88 122 - -
Stsc272279g00001 267 MobiDBLite consensus disorder prediction 1 36 - -
Stsc272279g00001 267 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Stsc272279g00001 267 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Stsc272279g00001 267 MobiDBLite consensus disorder prediction 183 202 - -
Stsc272279g00001 267 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272279g00001 Stsc-Chr272279 3732 4535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272279g00001 12 106 AP2-EREBP Transcription Factor Family AT1G75490 78.947 1.37e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc272279g00001 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272279g00001 - - gmx:100797850 246.128