Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271918g00004 ATGAAGAAGAACACGGGCACGGGCTTGTCAACATCAGCAGCAAGCAGCATGAACTTAGGGAGGAGGGCACTTGCTCAGTACAGTGCAGACGCTGAGATTCTGGCTGACTTCGAGCAATCAAATGTGTCCGGTAAATCATTCGACTACACAAAGTCGGTCGTGGACCCTCCCAAATCAGTCTCGGAGCAGAAGATGACTGCCTACCTCTCCACAATCCAAAGGGGCGGACTCATCCAGCCCTTCGGTTGCATGCTCGCAGTCCAAGAACCCACTTTCAACATCATTGCCTACAGCCACAATTCCCTCCACCTCTTGGGTCTCGCCACACAATTCGATGCACTTCTTGGAGTTGATGCCACCACACTCTTCACTCCTGCTTCGGGGGCTTCCCTCGCGAAAGCTGTAGCTTCGAGGGAAATCTCGCTGCTTAATCCCGTTTGGGTGTACGCTAGGGCCACGCAGAAGCCGTTCTACGCAATACTTCACCGGATTGATGTTGGAATTGTCATTGATTTGGAGCCTGCAAGGTCTAGTGACCCTGCATTGTCGTTCGCTGGTGCGGTTCAGTCGCAGAAGCTGGCGGTTAGAGCGATTTCGCGGCTGCAGTCGCTTCCCGGCGGAGACATTGGTGTTCTGTGCGACTCTGTTGTAGGGGAAGTTCAAAAGCTTACTGGATACGACAGAGTTATGGTGTATAAATTCCACGAAGATGATCACGGCGAGGTCGTTTCGGAGATTCGGAGGTCCGATTTGGAGTCTTATTTGGGTCTCCACTACCCTGCCACTGATATTCCTCAAGCCACTAGATTCTTGTTCAAGCAGAATCGGGTTCGGATGATTTGTGATTGCAATGCTAAGCCGGTTAAGGTAAGTCAGAATCAAGAGTTGAGCCAACCGCTTTGTTTGGTGAACTCAACTCTAAGGGCGCCACACGGTTGTCACACTCAGTATATGGCTAACATGGGCTCCATTGCTTCACTGGTCATGTCCATTGTGGTAAATTCCAAAGATTCCACGAGGCTATGGGGTTTGCTAGTGTGCCATCACACTGCGCCGCGCTACGTGCCTTTCCCAGTTCGCTACGCTTGTGAGTTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAAATTCAGTTAGCAGCCCAATTGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGTGACGCGCCCTTTGGGATTGTTACTCAGTCTCCTAACATCAAGGATCTTGTCAAGTGTGATGGTGCTGCCCTGTATTATGATGGAAGTTGTTGGTTGTTAGGTACAACACCGTCCGAATCACAGGTAAAAGACATTGCTGAATGGTTGCTTAGCACTCATGGTGACTCAACCGGTTTGAGTACGGATAGTTTGGCTGATGCTGGTTATCCTGGTGCTGCTTTGCTTGGGGATGCAGTTTGTGGCATGGCAATGGCACGAATCAGTTCGAGGCATTTCTTGTTTTGGTTCCGGTCTCACACGGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCAGAGGATAAGGATGATGGAGGGAAAATGAATCCGAGGTCTTCTTTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAGCTTATAATGAGAGATTCGTTTCACAATGCTGAAAATAGTGGTATTAAGGCTATAAACTATATACAGAGAAGTGATACTTCAAGTGGTGGGATTGATGAGCTAAGTTCGGTAGCATTAGAAATGGTGAGGTTAATTGAGACGGCAACTGTCCCGATTTTCGGGGTTGACACAGATGGCCTAATCAATGGATGGAATGCGAAAATTGCGGAATTGACAGGTTTTCCGGCAACTGAAGCTATTGGAAAATCACTAGTGAATGAGGTAGTTCATGTAGACTCGCGCGCAAATCTTGAAAATATTCAAAGTAGAGCCTTGCAAGGCCAAGATATCACTTGTGAGAAAATTGTTCTTGACAAATTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCTCTAATTCCACCGATATTTGCTTCTGATGAGAGTGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGATGAAGTTATAGGAAAACTGCTTCCTGGGGAAATCTTTGGAAGCTTTGTTAGATTGAAAAGTCAAGATACACTGACTAACTTTATGATCTTGCTTTACCGGGGAATTAGTGGACAAGAATTCGACAAGTTTCCCTTCGGATTTTTTGATAGGAACGGAGAGTTTATAGAGGCTTACATTACTGCAAACAAGAGGATCGACACGAGTGGGAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCCGAATAAGCCTTCTGATGGACAAAATCCCCCTCAGGAAAGGAAGAACATCTCTGAATCTAAGGAGTTCGCTTATATATTACAAGAGATGAAGAACCCTTTAAACGGTATTCGGTTTACACATAAGCTTCTAGAAGATACTGCTGTTTCAGAAAGCCAGAAACAGTTTCTTGATACTAGTGATGCCTGTGAAAGACAGATAATGGCAATTATTGAGGAGACAGATTTAGGAAGTATCAATGAAGGGAGTGTGCAGCTAAAGATGGAGGAATTTGTTCTTGGGAGCATTTTAGATGCCATAGTGAGTCAAGTGATGCTGTTGGTGAGAGGCAAAAGCTTGCAGCTGTTTCATGAAATTCCTGATGAAATCAAAACACTCGCTCTTTATGGTGACCAAATTAAGCTTCAGATGGTCTTATCTGACTTTCTGCTTAATGTTGTTAACCATACACCATCTCCAAATGGCTGGGTTGAAATCAAGATTTCACCTGGCTTGAAGATAATTCAGGACGGCCACGAGTTTATCCACTTGAAATTCAGAGTGAGCCATTCCGGTCAAGGTCTTCCTTCTAACATTCTTCAAGATGTGTTTGAAGAAGGGAATCAATGGACTACACAAGAAGGTCTAGGGCTATATATGTCAAGAAAAATGCTTAGTAGGATGAATGGTCATGTTCACTATGTGAGAGAACAAAATAAATGTTACTTCCTCATTGAACTTGAACTTAGAACAAGAAAAGAATGGCAAAGGAATTTGCAACCTGAGACAAGCATGTTGAGTTAG 3201 0.4508 MKKNTGTGLSTSAASSMNLGRRALAQYSADAEILADFEQSNVSGKSFDYTKSVVDPPKSVSEQKMTAYLSTIQRGGLIQPFGCMLAVQEPTFNIIAYSHNSLHLLGLATQFDALLGVDATTLFTPASGASLAKAVASREISLLNPVWVYARATQKPFYAILHRIDVGIVIDLEPARSSDPALSFAGAVQSQKLAVRAISRLQSLPGGDIGVLCDSVVGEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLESYLGLHYPATDIPQATRFLFKQNRVRMICDCNAKPVKVSQNQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNSKDSTRLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQLAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGSCWLLGTTPSESQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAALLGDAVCGMAMARISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIMRDSFHNAENSGIKAINYIQRSDTSSGGIDELSSVALEMVRLIETATVPIFGVDTDGLINGWNAKIAELTGFPATEAIGKSLVNEVVHVDSRANLENIQSRALQGQDITCEKIVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLPGEIFGSFVRLKSQDTLTNFMILLYRGISGQEFDKFPFGFFDRNGEFIEAYITANKRIDTSGNMIGCFCFLQIVSRDPNKPSDGQNPPQERKNISESKEFAYILQEMKNPLNGIRFTHKLLEDTAVSESQKQFLDTSDACERQIMAIIEETDLGSINEGSVQLKMEEFVLGSILDAIVSQVMLLVRGKSLQLFHEIPDEIKTLALYGDQIKLQMVLSDFLLNVVNHTPSPNGWVEIKISPGLKIIQDGHEFIHLKFRVSHSGQGLPSNILQDVFEEGNQWTTQEGLGLYMSRKMLSRMNGHVHYVREQNKCYFLIELELRTRKEWQRNLQPETSMLS 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271918g00004 1066 CDD PAS 604 675 IPR000014 -
Stsc271918g00004 1066 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 889 1049 IPR036890 -
Stsc271918g00004 1066 Gene3D - 383 556 IPR043150 -
Stsc271918g00004 1066 SUPERFAMILY PYP-like sensor domain (PAS domain) 696 798 IPR035965 -
Stsc271918g00004 1066 CDD PAS 693 801 IPR000014 -
Stsc271918g00004 1066 Pfam His Kinase A (phospho-acceptor) domain 826 888 IPR003661 GO:0000155|GO:0007165
Stsc271918g00004 1066 ProSiteProfiles PAS repeat profile. 593 664 IPR000014 -
Stsc271918g00004 1066 NCBIfam PAS domain S-box protein 600 665 IPR000014 -
Stsc271918g00004 1066 Pfam Phytochrome region 391 565 IPR013515 GO:0006355|GO:0009584
Stsc271918g00004 1066 SMART gaf_1 208 388 IPR003018 GO:0005515
Stsc271918g00004 1066 Gene3D - 189 539 IPR029016 -
Stsc271918g00004 1066 SUPERFAMILY GAF domain-like 386 563 - -
Stsc271918g00004 1066 SUPERFAMILY PYP-like sensor domain (PAS domain) 599 676 IPR035965 -
Stsc271918g00004 1066 ProSitePatterns Phytochrome chromophore attachment site signature. 308 317 IPR013516 -
Stsc271918g00004 1066 Pfam GAF domain 208 378 IPR003018 GO:0005515
Stsc271918g00004 1066 SMART HKATPase_4 936 1050 IPR003594 -
Stsc271918g00004 1066 Gene3D PAS domain 596 694 - -
Stsc271918g00004 1066 FunFam Phytochrome 695 803 - -
Stsc271918g00004 1066 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 936 1048 IPR003594 -
Stsc271918g00004 1066 ProSiteProfiles PAS repeat profile. 682 760 IPR000014 -
Stsc271918g00004 1066 SMART pas_2 681 751 IPR000014 -
Stsc271918g00004 1066 SMART pas_2 595 662 IPR000014 -
Stsc271918g00004 1066 SUPERFAMILY PYP-like sensor domain (PAS domain) 72 179 IPR035965 -
Stsc271918g00004 1066 CDD HisKA 824 879 IPR003661 GO:0000155|GO:0007165
Stsc271918g00004 1066 PANTHER OS08G0260000 PROTEIN 63 885 - -
Stsc271918g00004 1066 PRINTS Phytochrome signature 526 544 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 123 145 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 493 512 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 223 242 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 308 329 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 615 630 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 596 612 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 PRINTS Phytochrome signature 408 428 IPR001294 GO:0006355|GO:0009584
Stsc271918g00004 1066 Pfam PAS fold 596 674 IPR013767 GO:0006355
Stsc271918g00004 1066 Pfam PAS fold 682 801 IPR013767 GO:0006355
Stsc271918g00004 1066 CDD HATPase_Phy-like 935 1048 IPR044767 -
Stsc271918g00004 1066 FunFam Phytochrome 383 513 - -
Stsc271918g00004 1066 Pfam PAS fold 67 175 IPR013654 GO:0006355
Stsc271918g00004 1066 Gene3D - 866 1042 IPR036890 -
Stsc271918g00004 1066 Gene3D PAS domain 695 807 - -
Stsc271918g00004 1066 SMART HisKA_10 824 888 IPR003661 GO:0000155|GO:0007165
Stsc271918g00004 1066 SUPERFAMILY GAF domain-like 188 374 - -
Stsc271918g00004 1066 Gene3D PAS domain 71 311 - -
Stsc271918g00004 1066 ProSiteProfiles Histidine kinase domain profile. 831 1050 IPR005467 -
Stsc271918g00004 1066 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 208 368 IPR016132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271918g00004 Stsc-Chr271918 9470 15017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271918g00004 10 1050 Histidine Kinase Gene Family AT4G18130 60.795 0.0 1391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271918g00004 K12123 - gmx:100808192 1746.48