Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271896g00002 ATGGATGTGAAGAGAAGGGTAAATAACGGAAACAGCGACGACGATAACAACAACGAAGAAGAAATGGACCTCCGAAGAGGTCCATGGACGGTGGATGAAGACCTTACCCTCATCAATTACATTGCCAATCATGGCGAAGGTCGCTGGAATTCTCTTGCCCGCTCTGCCGGACTCAAACGAACCGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGCCCAGATGTTAGGCGTGGTAACATCACTCTTGAAGAACAACTTCTTATTCTTGAGCTACATGCTCGTTGGGGAAACAGATGGTCCAAAATTGCTCAATACCTACCCGGAAGAACTGACAATGAAATCAAGAACTATTGGCGAACTCGTGTTCAAAAGCATGCTAAACAACTCAAATGTGATGTAAATAGCAAGCAATTCAAGGACACCATGCGCTTCCTTTGGATGCCAAGACTAGTGGAGCGAATCCAAGCTGCGGCCGCTGCATCCACAGCCATTGCAGCCGCACCCGATTCTCCAACTTTATCAGCTACCACATCAGTCACCACCGTCAATAACAACACTACTACTATTCCATACAACAACTACGACAACCTTAACAACAACAACTTTGAGGTTCATAGTGGGAATAATATTCATATGAATATGAGCAACAATTTTGGCTATGCTACTCCGGAAAATAGTAGCACAGGCACGTCATCCGATTCTTTCGTGACACAAGATTATTACAACAACAATAATGTTCATCATGTTGGTAACAACAATAATAATAATAACCCTAATTCGGATTTTTACCACCAACAACAAGGGAATAACAATAACCAAGTCAGCTTCATGGATTGCATCACTAGTCCATCCTCCATGTCATTGTTCCCTCATCAAGAGATGGATTTCCAAGCTATGGAATTACCAAACACCCCTTGGATTAATAATAATCACACTACATTCAGCAATTTCTGGAATGATGAAAACATGTTGCTCTTACAAGGTCTAGGAGGTGGTGACAACGTGAGAATTGATTGGGAGAAAGGGATATAG 1038 0.4249 MDVKRRVNNGNSDDDNNNEEEMDLRRGPWTVDEDLTLINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQAAAAASTAIAAAPDSPTLSATTSVTTVNNNTTTIPYNNYDNLNNNNFEVHSGNNIHMNMSNNFGYATPENSSTGTSSDSFVTQDYYNNNNVHHVGNNNNNNNPNSDFYHQQQGNNNNQVSFMDCITSPSSMSLFPHQEMDFQAMELPNTPWINNNHTTFSNFWNDENMLLLQGLGGGDNVRIDWEKGI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271896g00002 345 Gene3D - 83 145 - -
Stsc271896g00002 345 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Stsc271896g00002 345 FunFam Myb transcription factor 26 78 - -
Stsc271896g00002 345 CDD SANT 28 73 IPR001005 -
Stsc271896g00002 345 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Stsc271896g00002 345 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Stsc271896g00002 345 CDD SANT 94 122 IPR001005 -
Stsc271896g00002 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Stsc271896g00002 345 Gene3D - 23 79 - -
Stsc271896g00002 345 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 216 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc271896g00002 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Stsc271896g00002 345 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Stsc271896g00002 345 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Stsc271896g00002 345 SMART sant 25 75 IPR001005 -
Stsc271896g00002 345 SMART sant 78 126 IPR001005 -
Stsc271896g00002 345 FunFam MYB transcription factor 83 146 - -
Stsc271896g00002 345 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271896g00002 Stsc-Chr271896 25257 27807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271896g00002 9 260 MYB Transcription Factor Family AT5G49620 59.398 1.41e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271896g00002 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271896g00002 K09422 - gmx:100805341 399.053