Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241667g00014 ATGCAGATCCAGGCCCAACAGCCATGGCAAACTCAACACCTTAACAATAACTCATGTCTTAGCTTCCTTGGGCCGAAGCCCATCCCGATGAAGCACGTGGGCTCAACAACATCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTCCCCAAGAACCGCACAAGGCTCTGGCTCGGAACCTTCGACACCGCTGAAGAGGCCGCTTTGGCTTACGACAAAGCCGCTTACAAGCTCCGCGGCGACTTTGCCAGGCTCAACTTCCCCAACCTCCGCCACCAAGGCTCCTCCGTCGGCGGTGACTTCGGCGAGTACAAGCCGCTTCACTCCTCTGTCGACGCAAAGCTTCAGGCCATATGCGAAGGTCTGGCCGAGATGCAGAAGCAGGGGAAGACGGAGAAGACGAAGCGGTCCAAAGCAGGTTCCAAAGCCGCGGCTGCGAAAGCACCGGCGGCGGAAGACGTTAAGGCTTCTTGCAAAGTGGAAGAAGCTGAAGGTGCAACGTCGCCGCCGGAGAGCGGTGGTGGTTCGTCGGAGGATTCTTCGCCTCTGTCAGATCTGACGTTTGGTGACGTGGATGAAGTTGGGAATAGCTTTAATCTTCAGAAGTTCCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 678 0.5605 MQIQAQQPWQTQHLNNNSCLSFLGPKPIPMKHVGSTTSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKTKRSKAGSKAAAAKAPAAEDVKASCKVEEAEGATSPPESGGGSSEDSSPLSDLTFGDVDEVGNSFNLQKFPSYEIDWDSL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241667g00014 225 MobiDBLite consensus disorder prediction 182 196 - -
Stsc241667g00014 225 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Stsc241667g00014 225 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Stsc241667g00014 225 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Stsc241667g00014 225 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Stsc241667g00014 225 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Stsc241667g00014 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 225 - -
Stsc241667g00014 225 MobiDBLite consensus disorder prediction 138 202 - -
Stsc241667g00014 225 Pfam AP2 domain 44 92 IPR001471 GO:0003700|GO:0006355
Stsc241667g00014 225 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Stsc241667g00014 225 CDD AP2 42 102 IPR001471 GO:0003700|GO:0006355
Stsc241667g00014 225 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241667g00014 Stsc-Chr241667 135925 136602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241667g00014 1 225 AP2-EREBP Transcription Factor Family AT1G78080 59.091 2.35e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241667g00014 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241667g00014 K09286 - gmx:100800478 298.13