Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151199g00004 ATGGCTTCGTCTTCCTCTGATCCCGGCAAGTCAGATGCCGGAGGCGGCGGTGCGGAGACTTCGGAGGCGGTGGTGGCAGCTGCGAACGATCAGCTTCTGCTGTACAGAGGACTCAAGAAGGCGAAGAAGGAGAGAGGCTGCACCGCCAAAGAGCGTATCAGCAAGATGCCACCGTGCGCCGCCGGCAAACGCAGTTCCATATATCGCGGCGTTACCAGGCATAGATGGACGGGCCGTTATGAGGCACATCTTTGGGATAAGAGTACGTGGAACCAGAATCAGAATAAGAAAGGGAAGCAAGTTTACTTGGGAGCTTATGATGACGAGGAGGCAGCAGCTAGAGCATATGATCTTGCTGCTTTGAAATACTGGGGTCCAGGAACGCTTATTAACTTCCCAGTGACTGATTATAAAAGAGATCTTGATGAAATGCAAAGTGTTTCCAGGGAGGATTACCTTGCCTCTTTGCGTAGGAAGAGCAGTGGTTTTTCAAGAGGAATATCAAAATATCGTGCACTCTCCAGTCGATGGGAGCCATCATATGGTCGTATAGCTGGATCGGATTACTTCAATAGCATGCATTATGGCGATGATTCAGCAGCAGAAAGTGATTACATGAGTGGTTTCTGTATAGAAAGAAAGATTGATTTAACTAGTCACATCAAGTGGTGGGCATCTAATAAAAATCGACAGCCTGATAGTGGGACAAGATTATCAGAAGAAAAGAAACATGGATTTGCTGGAGATGTTTGTAGTGAACTTAGGATACTAGAGCAAAAAGCCCAACCTACTGAACCATACCAAATGCCGGAGTTAGGTCAGCCCCACAATGAGAAAAAACATAAAAGTTCTTCGGGATCTGCCTTAAGTATTCTATCACACTCTGCCGCTTACAAAAGCTTGCAAGAGAAAGCAGCCAAGAGACAGGAAAATAGTACAGAAAATGATGAGAACGAAAACAAGAATATAGTCAGTAAGTTGGATCACGGCAAAGCAGTTGAGAAACTAAGTCAGGAGGGTGGAAATGACCGACTTGACATTGCAATGGGGATGAGCGGAGCATTGTCACTTCAGAGAAATGTTTACCCGTTGACTCCATTTCTGTCTGCACCACTCTTGACAGCCTACAACTCTGTAGATCAATTAGGAGATCCCGTTCTCTGGACATCTATTGTTCCCATACTTCCAGCTGGCATGATTCCTCGTACAACGGAGGCTACCAAGACTGAGACCAGTTCAACTTACACTATGTTTCAGCCAGAGGAGTGA 1269 0.461 MASSSSDPGKSDAGGGGAETSEAVVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYKRDLDEMQSVSREDYLASLRRKSSGFSRGISKYRALSSRWEPSYGRIAGSDYFNSMHYGDDSAAESDYMSGFCIERKIDLTSHIKWWASNKNRQPDSGTRLSEEKKHGFAGDVCSELRILEQKAQPTEPYQMPELGQPHNEKKHKSSSGSALSILSHSAAYKSLQEKAAKRQENSTENDENENKNIVSKLDHGKAVEKLSQEGGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNSVDQLGDPVLWTSIVPILPAGMIPRTTEATKTETSSTYTMFQPEE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151199g00004 422 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Stsc151199g00004 422 FunFam AP2-like ethylene-responsive transcription factor 66 135 - -
Stsc151199g00004 422 MobiDBLite consensus disorder prediction 263 286 - -
Stsc151199g00004 422 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Stsc151199g00004 422 MobiDBLite consensus disorder prediction 1 20 - -
Stsc151199g00004 422 MobiDBLite consensus disorder prediction 301 321 - -
Stsc151199g00004 422 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Stsc151199g00004 422 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Stsc151199g00004 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 307 - -
Stsc151199g00004 422 SUPERFAMILY DNA-binding domain 66 134 IPR016177 GO:0003677
Stsc151199g00004 422 Pfam AP2 domain 67 125 IPR001471 GO:0003700|GO:0006355
Stsc151199g00004 422 Gene3D AP2/ERF domain 67 135 IPR036955 GO:0003700|GO:0006355
Stsc151199g00004 422 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151199g00004 Stsc-Chr151199 27912 31115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151199g00004 25 418 AP2-EREBP Transcription Factor Family AT2G41710 61.687 5.23e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151199g00004 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151199g00004 K09285 - gmx:100814117 683.715