Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151107g00001 ATGTTGCATTGCGTGAACATGACTGTGCTGGAGAGGCAGCAAGCAAGAACCAGGAAATGCCATCAACAAGATCAAGATCAAGATCAAGATTATCAACGGTCGTCATTGTTCGACGTGTTCTCTTCTTCCATCACAATGGACGGTTACGATGATTCCTCTCTTCACATGCCTGTCATGCCTCCTCCCGCTCCTGCTCCTTCTTCTTCTTCCGCACTTTCAAGGACGACTACTTCTATCGCTCCACGTGTCGCGTCCTCATTGGCCTCTCCCACACTCGGCAAGAAGAGAAAACCTCTAACTCAAAAGGTGGTTGCTGGTGGTGGTGGCGGTGGTGAACAACAGAGTGAGAACATCAAGAAGGACAAAAAGGTCAAAGTGAGTGGTGGTGAAGAAGAGTCGTCTAAAATGAGTGAGCAAACGAACAAGGAGGAAGTAGCTTCTGCTGAGAATTCGAAAGGATCTTCGGAGGCTCAGAATCACAAACCTGACTACATTCATGTCCGAGCTCGCCGCGGCCAAGCCACCGATAGTCACAGCCTTGCTGAAAGAGTTAGGAGGGAAAAGATTAGTGAGAGAATGAAGTATCTGCAAGATTTGGTACCTGGTTGCAACAAGATTACAGGGAAAGCTGGAATGCTTGATGAAATCATAAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTTTTGTCTATGAAATTAGCTGCTGTAAACCCAAGGCTTGACCTCAACATTGATGATCTCTTTGCTAAAGAGGTGTTTCCTGCTTGTGCTCCAAATTTTCAAAGCATTGGAATGGCATCATCATCAGAGATGAGTAATAACCCTGCTGCTGCTGCTGCATATCTTGACTTCAGTTCAGTTCAACAACTTGTGTCATGTTCCAATGGATTAATCAACAACATTGGCATGAGTATGAACCCTTCACCAGACATGGGGATTAGGAAAACCATTGCTCCACCTCTCTCTGTGTCTTTACCAGAAACGTTTCTTGACTCATCATCTTGTTTCACTCAAGCTTTACCTCCTTCAATTTGGGAAGGTGAATTCCAAATCCAAAACCTTTACAATGTGGCTTTTGATCAACCTATTAGAACATCATCTTTTCCACCTTCTCACCCATTTACAGGTTTAGTTGAAGCTAGCAATCTAAAGATGGAGATGGAGATGGAGATGTAG 1179 0.4419 MLHCVNMTVLERQQARTRKCHQQDQDQDQDYQRSSLFDVFSSSITMDGYDDSSLHMPVMPPPAPAPSSSSALSRTTTSIAPRVASSLASPTLGKKRKPLTQKVVAGGGGGGEQQSENIKKDKKVKVSGGEEESSKMSEQTNKEEVASAENSKGSSEAQNHKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLNIDDLFAKEVFPACAPNFQSIGMASSSEMSNNPAAAAAYLDFSSVQQLVSCSNGLINNIGMSMNPSPDMGIRKTIAPPLSVSLPETFLDSSSCFTQALPPSIWEGEFQIQNLYNVAFDQPIRTSSFPPSHPFTGLVEASNLKMEMEMEM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151107g00001 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 241 IPR036638 GO:0046983
Stsc151107g00001 392 MobiDBLite consensus disorder prediction 115 139 - -
Stsc151107g00001 392 MobiDBLite consensus disorder prediction 14 28 - -
Stsc151107g00001 392 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 274 IPR024097 GO:0006355
Stsc151107g00001 392 MobiDBLite consensus disorder prediction 140 158 - -
Stsc151107g00001 392 MobiDBLite consensus disorder prediction 68 85 - -
Stsc151107g00001 392 MobiDBLite consensus disorder prediction 51 161 - -
Stsc151107g00001 392 FunFam Basic helix-loop-helix transcription factor 170 242 - -
Stsc151107g00001 392 MobiDBLite consensus disorder prediction 14 34 - -
Stsc151107g00001 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Stsc151107g00001 392 Gene3D - 170 244 IPR036638 GO:0046983
Stsc151107g00001 392 SMART finulus 179 229 IPR011598 GO:0046983
Stsc151107g00001 392 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983
Stsc151107g00001 392 CDD bHLH_AtBPE_like 163 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151107g00001 Stsc-Chr151107 7400 9986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151107g00001 1 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.000 3.01e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151107g00001 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151107g00001 - - gmx:100815751 346.665