Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122073g00001 ATGGGAAGCGAAATCGTTGATCCTATTCCAGAATACATCTACCGCTGCAAGAAGGCCTCTCTTCTCAACTCCCTCAAAGACGAGTTGCACAACACTCCCCTCATCCACGAACACATGCTCTACAAACTCGAGTTTCTAGAAGAACTCGATTACCGCATCGGTTCTCCCGTTTCCCCTTCCTTCTCCGCCGCCTACTGTGCCGTCGCTGTACAGTGCACCCTCATGCACCTTAGCGCGCACTCTTCCGATGACGTCATCTCCACCGACTCTGCCTATGTCAAAGCCATAAACCGCATCTGGCGCGATCACATTTCTTACATGGAATCCTATTCCTCCTCCGGCGTCGGGTGCCAGCTGTACAATGCGGAGCTGAAGCGGTGGGGCGATGAAATCAAGGCTTCGATTTCGGATCCCAGTGTTTTGAAGCGGTTGGAAAGCTACAATAGTAGGGAAGATGCCATTTCGAAGCTCAAGGATTATTTGGTTGAAGCCTCACAAGATTTGAGTGCTTATTTCCTTGTGATAGCTTTCTTTACTGCTTCACACGCTGATAGTAGTTATCCTGCTTCTGTTGAGTTTGTTCGCCATAAACAGGAAGCTAGTAAGCTTGTTAGTCTCGCCGTACGTCTCCACCTCGCCCTCCAAAGAGATACAGATTTACGTGGTCAATATGTTTCTGCAGCTACTTCTGCTGAGGAGCGTAATGAATCAGAACGGGGTTTGCATGAAGGAGCATCAGATCATGCCACCAAGATTCAATTGCCTAGCCCCAAGAGATGGAAAATCTCTCCATTGAGAAAATATGAAGAACGAAACATAATAATGAGGAGAAAAAAGAAAAGATGGAGTAAGTTGGAAGAAGAGACACTGAGGTCTGCTGTGAATCAGCATGGTGAAGGAAACTGGAAGTTGATCCTTAGTGCTCACATGGATGTATTTGAAGAGAGAACTGACGTTGATTTGAAGGATAAATGGAGAAACATAAAGCGTCATCGAGCTAATTAG 1005 0.4647 MGSEIVDPIPEYIYRCKKASLLNSLKDELHNTPLIHEHMLYKLEFLEELDYRIGSPVSPSFSAAYCAVAVQCTLMHLSAHSSDDVISTDSAYVKAINRIWRDHISYMESYSSSGVGCQLYNAELKRWGDEIKASISDPSVLKRLESYNSREDAISKLKDYLVEASQDLSAYFLVIAFFTASHADSSYPASVEFVRHKQEASKLVSLAVRLHLALQRDTDLRGQYVSAATSAEERNESERGLHEGASDHATKIQLPSPKRWKISPLRKYEERNIIMRRKKKRWSKLEEETLRSAVNQHGEGNWKLILSAHMDVFEERTDVDLKDKWRNIKRHRAN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122073g00001 334 ProSiteProfiles Myb-like domain profile. 274 329 IPR001005 -
Stsc122073g00001 334 SMART sant 278 331 IPR001005 -
Stsc122073g00001 334 MobiDBLite consensus disorder prediction 232 246 - -
Stsc122073g00001 334 Pfam Myb-like DNA-binding domain 279 329 IPR001005 -
Stsc122073g00001 334 SUPERFAMILY Homeodomain-like 275 329 IPR009057 -
Stsc122073g00001 334 MobiDBLite consensus disorder prediction 227 253 - -
Stsc122073g00001 334 CDD SANT_TRF 280 330 - -
Stsc122073g00001 334 Gene3D - 272 334 - -
Stsc122073g00001 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 274 333 IPR017930 -
Stsc122073g00001 334 PANTHER MYB TRANSCRIPTION FACTOR 233 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122073g00001 Stsc-Chr122073 7177 10348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122073g00001 275 328 Single Myb Histone (SMH) Gene Family AT3G49850 44.643 3.06e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc122073g00001 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122073g00001 - K11111 adu:107474354 239.58