Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2188 ATGGCAACAGAAGAGCCCACTGTCGCGGTGGAACCCGCACCCGAACCTGCCAACGCCGAGCCTCCTCCGGAGGAGAAGGAGGAGCCCAAACCTGAAGCCAAGGCCAAGAAAACAAAGGAACCCAAGCCTAAGAAGGTTTCCAGACCGCGCAACCCTCCCACTCATCCTTCCTACGAAGAGATGATTAAAGACGCAATTACCTCGCTGAAGGAGAAAACCGGTTCCAGCCAATACGCGATTGCGAAGTTCATTGAGGAGAAGCACAAACAGCTTCCACCAAACTTCAGGAAGCTCTTACTCTACCACTTGAAGAAGCTCGTTGCTGCTGGAAAACTCGTCAAAGTCAAAGGCTCCTTTAAGCTTCCACCAACCAGACCCTCTCCATCATCTCCGGCTAAGAAGAAGAAGCCCGCAGCTGCCAAGCCTAAGCCTAAGCCCAAGCCGAAGCCGAAGCCAAAGCCCGCTGTCAAGGCTAAGGACACCAAGACAACTAAATCAAAGGCACCAGCTAAGCCTAAGCCAGCTGCCAAGACTAAGGCCAAAGCTCCTGTCAAGCCCAAGCCCGCTGCAAAGCCCAAGCCAGCTGCCAAGCCCAAGCCTGCCGCTGCCAAGCCCAAAGCTGCTAAGCCAGCTGCCAAGCCCAAGCCTGCTGCTGCAAAGCCCAAAGCCACTAAGCCAGCCGCGAAGCCCAAGGCCAAGCCCGCGAAGGCTGCAAGGACGTCGACGAGGACATCACCGGGGAAGAAGGCCCCTGCCGCTAAACCCGCGCCAAAGAAAGTAGCGGCAGCGAAGAAAGCTCCGGTGAAGAGTGTGAAACCAAAGAGTGTAAAGTCTCCGGCGAAAAAGGCTACGGCTAAGAGAGGGGGTAGGAAAACAATGGAATTGTTCTGTTCTTTCTTTATGAAAGTGTTTGTGCATATGGCTGTAGCTTATTCAGAGTTAATCCCTTTTCACATTGTCGACTTTGTGTTGGACTACATTTGGATTGTTGTGTTACTACGTCTTCATGGAGATCAGAAAACAGAACAACACAGGGACAGAACAAAGCAAGGCAGCAGAAGTCACGGTTGGCCAGGAACAGTGACAGATTTGTCAGAAAATGGCCGCAAAGATCTCAGGGATGATCAGAAACTATGGAGAGCAGAGGGTGCAAAGGCTGGGGATTGCCAACTGTCACAGCTGGCCAGAGAAATGTTGGGAAATGCTGGAAATGTTGCATGGAAGGGTGAGTGTTTGTTGAGAAGGAGAACAGGTTGCCCTACTGCATAA 1269 0.5225 MATEEPTVAVEPAPEPANAEPPPEEKEEPKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPSPSSPAKKKKPAAAKPKPKPKPKPKPKPAVKAKDTKTTKSKAPAKPKPAAKTKAKAPVKPKPAAKPKPAAKPKPAAAKPKAAKPAAKPKPAAAKPKATKPAAKPKAKPAKAARTSTRTSPGKKAPAAKPAPKKVAAAKKAPVKSVKPKSVKSPAKKATAKRGGRKTMELFCSFFMKVFVHMAVAYSELIPFHIVDFVLDYIWIVVLLRLHGDQKTEQHRDRTKQGSRSHGWPGTVTDLSENGRKDLRDDQKLWRAEGAKAGDCQLSQLAREMLGNAGNVAWKGECLLRRRTGCPTA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2188 422 MobiDBLite consensus disorder prediction 113 287 - -
Ssu7g2188 422 MobiDBLite consensus disorder prediction 153 167 - -
Ssu7g2188 422 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g2188 422 MobiDBLite consensus disorder prediction 136 152 - -
Ssu7g2188 422 MobiDBLite consensus disorder prediction 1 69 - -
Ssu7g2188 422 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g2188 422 Pfam linker histone H1 and H5 family 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g2188 422 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g2188 422 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g2188 422 PRINTS Histone H5 signature 110 134 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g2188 422 PRINTS Histone H5 signature 203 222 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g2188 422 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g2188 422 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g2188 422 PANTHER HISTONE H1 2 194 - -
Ssu7g2188 422 MobiDBLite consensus disorder prediction 172 186 - -
Ssu7g2188 422 MobiDBLite consensus disorder prediction 20 39 - -
Ssu7g2188 422 PANTHER HISTONE H1 171 288 - -
Ssu7g2188 422 PANTHER HISTONE H1.1 2 194 - -
Ssu7g2188 422 MobiDBLite consensus disorder prediction 339 367 - -
Ssu7g2188 422 SUPERFAMILY "Winged helix" DNA-binding domain 51 136 IPR036390 -
Ssu7g2188 422 Gene3D - 50 127 IPR036388 -
Ssu7g2188 422 PANTHER HISTONE H1.1 171 288 - -
Ssu7g2188 422 CDD H15 52 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2188 Ssu-Chr7 42909399 42914939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2188 52 163 Single Myb Histone (SMH) Gene Family AT1G49950 32.456 1.93e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2188 K11275 - gmx:100795994 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2188 7 42909399 42914939 Ssu7g2188 7 42909399 42914939 ECH