Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1837 ATGCTCCACCAGCAACTCCTCATGTCCAGAGCCCCCGACTCTGGCCTCCTCCACATGCCCCTCTCCTTGCCCGGAAACGACGTCGTTGACTCCTCTTCCTTCAAATCCCCCAATCCCGATGGTGAGGCTTCGGTCCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCAGGTCAAGCCTCGAACCAGACTCAGCATTTTCAACATCCTCAGGGAAGTTCGAATCCGATGCAGGGGCAAAATTTTGGTGCGCCGGGTGCAGGGGGCGGAACGAGCCAAGCTCCGGCAAGTGGCGCCACTGGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGAGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAGGCACTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTTAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCGGCTGCTGTAGCTCCCCTTGTTGCTGATATGTCCCCTGAGGGAGGCGGTGACTGCATCCAAGCCAACGGCAACAGTAACGGCGGTGGGGCCCTCGCCCCGaactccaacaacaacaacaaccaaacgACAGCGTCAACCTCAAACGACAGCCTCACCATGACGGAGCACCAGGTAGCGAAACTCATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGAAAGGGCCTTTGCCTCATGCCCATTTCCCTCGCCACTGCCATCTCCACTGCTACGTGTCACACCAGGAACCCCTTGATCAACGCCGCCTCCGGCAGCACCCAGATTCCGACCAACGGCGCCGCAGTCACCCACGCCAAACCCGCCGTCGCGTCCAACGGCGAAGGGCCGTCGTCTCCGAGCATGTCCGTGCTGACGGTGCAGTCCGCCGTCGTGGGTAACGACGGCGCCGTGAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1035 0.5865 MLHQQLLMSRAPDSGLLHMPLSLPGNDVVDSSSFKSPNPDGEASVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGAPGAGGGTSQAPASGATGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSPEGGGDCIQANGNSNGGGALAPNSNNNNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASGSTQIPTNGAAVTHAKPAVASNGEGPSSPSMSVLTVQSAVVGNDGAVKDAASVSKP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1837 344 Gene3D - 114 176 IPR036638 GO:0046983
Ssu1g1837 344 MobiDBLite consensus disorder prediction 56 130 - -
Ssu1g1837 344 PANTHER TRANSCRIPTION FACTOR BHLH69 14 289 - -
Ssu1g1837 344 SMART finulus 125 174 IPR011598 GO:0046983
Ssu1g1837 344 MobiDBLite consensus disorder prediction 203 232 - -
Ssu1g1837 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Ssu1g1837 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 179 IPR036638 GO:0046983
Ssu1g1837 344 Pfam Helix-loop-helix DNA-binding domain 124 169 IPR011598 GO:0046983
Ssu1g1837 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 289 - -
Ssu1g1837 344 MobiDBLite consensus disorder prediction 115 130 - -
Ssu1g1837 344 MobiDBLite consensus disorder prediction 57 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1837 Ssu-Chr1 46424512 46427647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1837 96 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 60.448 2.15e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g1837 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1837 - - gmx:100807286 441.425