Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1031 ATGTATCATTCAAAGAATGTTCCTAGTGCAAGTTTGATTGGGGGTAATTCATTAGTTCATGGTCAGCACATAGATTGTGGTGGCAGCACAATGGATCCTGGCAGTGGAGGAAACAGTCTTAGCAACAACTCTAATCTCACCTCAAAACAACGTTTACGGTGGACGCATGAATTACATGAGCGCTTTGTTGATGCTGTGGCTCAACTGGGTGGGCCAGATCGTGCCACACCCAAGGGCGTCCTCAGAGTTATGGGTGTACAAGGCTTGACCATTTACCATGTCAAAAGCCATTTACAGAAATACCGACTAGCAAAATATTTACCCGACTCCTCATCTGATGAAGGGAAAAAGGCCGACAAGAAAGAAACGGGGGATATGCTTTCCAATCTTGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTACATGAACAATTGGAGGTGCAAAGACAACTACAATTACGGATAGAAGCCCAGGGTAAATACCTGAAAAAGATAATTGAAGAACAACAGCGGCTCAGTGGCGCTCTTTCAGAGGCACCTGGCTCTGGGGTAGCAGCCCTGGTTCCAGGTGATGCGTGCCAAGAACCTGATAATAAGACTGACCCGTCAACCCCCGACCCTGAAAAGGCTGCCAAAGACCGTGCCCCGGCAAAGAGTCTTTCAATCGAATCTTTTTCATCACACCATGAACCGTTGACACCAGATTCTGGCTGCCATGTTGGTTCCCCTGCTGACAGCCCTAAAGGGGAGAGAGCAACCAAGAAGCAACGAGTAAGCATGGACGGAGTGTATTCTAAACCAGACATGGTGCTTCCGCATCAGATACTGGAGTCGAGCATGTCATCATACCAGCAACCTAACACTGTTTTCCTTGGCCAAGAGCAATTTGATCCTTCTTTGGGTATACCAACCAGAAGTGGTGAGGAATTGGACAAGGTTGGTGGCAGTAATCTGTGA 990 0.4737 MYHSKNVPSASLIGGNSLVHGQHIDCGGSTMDPGSGGNSLSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGALSEAPGSGVAALVPGDACQEPDNKTDPSTPDPEKAAKDRAPAKSLSIESFSSHHEPLTPDSGCHVGSPADSPKGERATKKQRVSMDGVYSKPDMVLPHQILESSMSSYQQPNTVFLGQEQFDPSLGIPTRSGEELDKVGGSNL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1031 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 106 IPR017930 -
Ssu1g1031 329 MobiDBLite consensus disorder prediction 188 277 - -
Ssu1g1031 329 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Ssu1g1031 329 MobiDBLite consensus disorder prediction 212 227 - -
Ssu1g1031 329 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Ssu1g1031 329 Coils Coil 139 159 - -
Ssu1g1031 329 MobiDBLite consensus disorder prediction 108 132 - -
Ssu1g1031 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Ssu1g1031 329 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Ssu1g1031 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 320 - -
Ssu1g1031 329 MobiDBLite consensus disorder prediction 302 329 - -
Ssu1g1031 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 320 IPR044848 GO:0003700
Ssu1g1031 329 MobiDBLite consensus disorder prediction 108 126 - -
Ssu1g1031 329 Gene3D - 48 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1031 Ssu-Chr1 22427466 22429917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1031 84 329 G2-like Transcription Factor Family AT2G01060 60.985 1.60e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu1g1031 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1031 - - gmx:100786925 599.356