Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05090 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTTGAGATCTGCGAGAGAGTTTACGTTTTTGATTACTGCTTCACCACGGATGCTTGGAAAGAAGAGAATTACAAAGTGTATATGGATGGGGTAGTTGGTCAACTTAGGGAGGACTTGCCAGATGCTTCGATTCTGATTTTCAATTTTCGCGAGGAACATACCCAGAGTCAGATGGCAAATATCATGTCTGAGTATGACATTACTATCATGGACTATCCTCGGCACTACGAAGGTGTTCCCGTGCTTAAAATGGAGCTCATCCACCACTTTTTGCGGTCTGGTGAAAGCTGGCTCTCGCTTGGGCAACAGAATGTGTTGTTGATGCATTGTGAGCGTGGTGGTTGGCCTGTTTTGGCTTTTATGTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTTGAAATGGTTTACAGACAGGCTCCACACGAGCTTTTGCATTTGCTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTTCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCACTGGACCGGGCACTTATGTTGGACTGCGTCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGTCATCCCGTGTTTAGAATTTATGGACAGGATCCGGTTAGTGCTGATAAAAATCCAAAAATGTTGTACTCAACGCCAAAGAGAAGCAAAAATGTCCGGGCCTATAAGCAGGGAGAGTGTGAACTCATTAAAATTGATATCAATTGCCAAATTCAAGGTGATGTTGTCATTGAGACTATTAACTTTAATGGTGACATGAAGTGTGAAAGGATGATGTTCCGAGTCATGTTTAACACAGCCTTTGTGAGATCTAATATTTTGATGCTTAACCGGGATGAAGTTGACATTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTTAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCCGATGGTACCTCATGCTTTGAGGAGAAGGAAGGACTGCCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAACCATGTAGACTGGATGAACCCCAAGGCAGATGCTGCACTAAATGCTCTCCAACTGATAAGTTCTTCAACTATGAATGACAGGTTGGATGAAAAAGGTCTTAGAACGCCTCTGAGGAATTTGAATGAAGAGGTACAATCTTCATTCTCAACCAAGAGATCCCCACCAGATGATATGAGTAGAAAAGAGGGCAAGACCAACAAGGTCGAGGGTGTTTTGCTACAACCTAGAACATCTAACACTATCCTTCAAGAGACATCCAAATCTTCTGAAAGGACCATGGAATCCAATAAATGTCCAATAGGACCTACAAATCTTGACATAAAACTGCGGGCACCCAATCATGCCTTATCTTCTATTGATACTTCTTTTTCTCCTCGAACACCGCCTTTGCGGCCTCAATCCTCTGGTGCTAAAGAAGCTCATGATTCTCCTCGCCAATCAGAATCTCCCCCTTCTTATGTTCTGCCTTTGCAATCAAAACACCAATCACAAGACAAAAATCATTTAAATCAGTCACCAATTGACACCAGTTCCCATCTTTCAGCTTCAACAATTACTTCAATTCAGTCAACTCCTTCACCTTCTTCCAAAAATGTGAATGAGATTCCTCCTATTAGAACAAGACTGGAGTCTTCTAGTGCTAAAGAAGCTCATGATTCTCCTCGTCAATCAAAATCTCCCCCTTCTTATGTTTTGCCTTTGCAATCAAAACAACAATCACAAGACAAAAGTCATTCAACTCAGTCATCAGCTGACACCATTTCCCATCTTTCAGCTTCAACAATTACTTCAACTCAGTCATCGCCTTCACTTTCTTCCAAAAATGTGACGGAGATTCCTCCTATTAGTACAAGACTGGAGTCTTCCCCTTCACAACCTCCAACTCCACCTCCTCCTCCTCCCACTCCTCCACTAAATGATCATAGACAAGTTCGAGTTAAACCTCCTCCTCCAAAGGAAGAACTACATGTTAAAGTTGAACCCTTCCCTCCTCCTTTATCACATATAAATGTGGAACCACAGGTTAGGGATGGACCCTCTCCTCCCCCTTCTCTAAAAGAAGAGCTACAAGGTTCTACTATAATACCAACTCCACCTCCACCACCACTTTCAAACGCAGCACTTAACTCAAATGACACTAATTCATCATTGCAAAAATCTTCAGCTTCTCCACCTCCTCTTGCAGCACCTGCTCCCCCCCCTTCTCTTGTAGTATCTGCTCCTCCCCCTCCTCCTGCAGCACCAGCTCCTCCCGCTCCTCCTACAGCACCGGCTCCTCCCCCTCCTCCTACAGCACCAGCTGCTCCCCCTCCTCCTGGAGCACCAACTCCTCCCCCTCCTCCAATTCCCTCTGGTAAAGGAGGTCTAAAACCAGACAGTTCTTTTCCAGGGTCTCTTTCTGTGAATGCTGATGGAAATAATGTGTCAGGCACAACAGGACCTCAATCTAGCTTAAAGGGACGAAGTTTATCACGTACAATTAACTCAAAGAATAACACAAAAAAGTTGAAGCCATTGCATTGGTTGAAACTATCTAGAGCTGTGCAAGGAAGTTTGTGGGCTGAGACACAAAAATCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATTTCAGAGCTTGAGCATCTCTTCTCAGCAGCAGTCCCAAGTCCAGGACTTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTCAAAGTGCCATTGCATGATTTAATGAGCTCAGTGCTAGCACTGGAAGAGTCAGCAATGGACACTGATCAGGTTGAGAATCTCATCAAGTTTTGTCCAACAAAAGAGGAGATGGAATTACTCAAGGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAGATCAGAAATTCTGTAAAATTGAAGAGAATTATGCAAACAATACTTTCTTTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTCACTGAGACACGTGCACGGGACAAGAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGTTGACAAACTACCGGAAGTTTTAGACTTCTCCAATGATCTTTCTGATCTAGAGCCAGCAGCAAAGGTTTTGGACTTCTCTGAGACTCTTCTATTCAAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAGTCGAGGAATTATCAACCGCTGAAAATGATGGGCCTATATCAGAAACTTTCCGCAAGAAATTGAAAGAGTTCCTTGGTTCTGCTGAAGCTGAAGTGCGTTCATTGGCTTCACTATATTCTAGCGTGGGTAGAAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCTCACTTGAGCAAGTTGCGTCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAATTGAAAATGAGAAAAAGAAATTTGAATCAGAAAGAATTTTACCTACAGCTATCCGGACCGGTGATGTCAAATAG 3705 0.4321 MLRKLFFRKPPDGLLEICERVYVFDYCFTTDAWKEENYKVYMDGVVGQLREDLPDASILIFNFREEHTQSQMANIMSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKAYTGEQRTLEMVYRQAPHELLHLLSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALMLDCVILRLFPNFDSEGGCHPVFRIYGQDPVSADKNPKMLYSTPKRSKNVRAYKQGECELIKIDINCQIQGDVVIETINFNGDMKCERMMFRVMFNTAFVRSNILMLNRDEVDILWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSCFEEKEGLPMEAFAKVQEIFNHVDWMNPKADAALNALQLISSSTMNDRLDEKGLRTPLRNLNEEVQSSFSTKRSPPDDMSRKEGKTNKVEGVLLQPRTSNTILQETSKSSERTMESNKCPIGPTNLDIKLRAPNHALSSIDTSFSPRTPPLRPQSSGAKEAHDSPRQSESPPSYVLPLQSKHQSQDKNHLNQSPIDTSSHLSASTITSIQSTPSPSSKNVNEIPPIRTRLESSSAKEAHDSPRQSKSPPSYVLPLQSKQQSQDKSHSTQSSADTISHLSASTITSTQSSPSLSSKNVTEIPPISTRLESSPSQPPTPPPPPPTPPLNDHRQVRVKPPPPKEELHVKVEPFPPPLSHINVEPQVRDGPSPPPSLKEELQGSTIIPTPPPPPLSNAALNSNDTNSSLQKSSASPPPLAAPAPPPSLVVSAPPPPPAAPAPPAPPTAPAPPPPPTAPAAPPPPGAPTPPPPPIPSGKGGLKPDSSFPGSLSVNADGNNVSGTTGPQSSLKGRSLSRTINSKNNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDISELEHLFSAAVPSPGLAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMSSVLALEESAMDTDQVENLIKFCPTKEEMELLKGYNGEKEKLGRCEQIRNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKMTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKVLDFSETLLFKEMQAINKGLEKVVEELSTAENDGPISETFRKKLKEFLGSAEAEVRSLASLYSSVGRNVDALILYFGEDPSRCSLEQVASTLLNFTRMFNKAHEENCKQLELEMKKIENEKKKFESERILPTAIRTGDVK 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05090 1234 ProSiteProfiles Formin homology-2 (FH2) domain profile. 807 1219 IPR015425 -
Spst3g05090 1234 Coils Coil 1194 1221 - -
Spst3g05090 1234 Coils Coil 1107 1127 - -
Spst3g05090 1234 Pfam Formin Homology 2 Domain 865 1011 IPR015425 -
Spst3g05090 1234 Pfam Formin Homology 2 Domain 1009 1193 IPR015425 -
Spst3g05090 1234 PANTHER FORMIN-J 2 768 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 658 674 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 591 657 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 760 821 - -
Spst3g05090 1234 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 741 758 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 514 575 - -
Spst3g05090 1234 Gene3D Protein tyrosine phosphatase superfamily 12 189 IPR029021 -
Spst3g05090 1234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 11 185 IPR029021 -
Spst3g05090 1234 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 335 IPR035892 -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 830 869 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 407 421 - -
Spst3g05090 1234 SMART it6_source 861 1234 IPR015425 -
Spst3g05090 1234 Gene3D - 194 338 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 400 869 - -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 439 467 - -
Spst3g05090 1234 SMART PTEN_C2_2 195 334 IPR014020 -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 483 499 - -
Spst3g05090 1234 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Spst3g05090 1234 Gene3D Formin, FH2 domain 1011 1223 IPR042201 -
Spst3g05090 1234 MobiDBLite consensus disorder prediction 680 694 - -
Spst3g05090 1234 Gene3D Formin, FH2 domain 858 1010 IPR042201 -
Spst3g05090 1234 SUPERFAMILY Formin homology 2 domain (FH2 domain) 936 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05090 Spst-Chr3 102585908 102595475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05090 1 397 Protein tyrosine phosphatase (PTP) family AT5G58160 65.414 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05090 - - var:108329436 1028.08