Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00567 ATGGCTGAGTTGGTGAAATCGGAGGAGTGTTGTCAGGAAAATAAGCAATCTACAGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCAGGGATATGTAGCCCGGCATCCACATCACCTTCCCATCGGAGGACCACTGGTCCTATCAGGCGCGCTAAGGGTGGTTGGACAGCACAGGAGGATGAAACATTAAGGAATGCTGTGGCAGTTTTTAAGGGAAAAAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGCCTGCATAGATGGCAAAAAGTTCTGAATCCAGAACTTGTCAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCAACAAAATGGTCTTTGATAGCTCAGTCTTTACCCGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCATAATCATCTCAACCCTGACATAAAGAAGGATGCTTGGACTTTGGAGGAGGAATTAGCCCTGATGAATGCTCATCGTATACATGGTAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCATTGGAATAGTTCTTTAAAGAAAAAGTTAGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCCAAGAATAGTCCACAAGTTACTGTAAAAGATACAATTAGACGTTCTGCTAGTAAATCAATACTTGTTTATTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGACGACAGTGGCAGGAATCAATTTGAGTCCTCAGGAACAGTTAGAGAAGTTGGCGATTCTTCAAGTGTTCCTGCAAATGAATCTGCCGATTCTGACTGTGTCGAATGCAAGCCTGGACCTTCTAACATCGATCTTAGCTGTAGCAACTCTGAACAAGTTTCGAAAGCTAATTGGAGAATAACTTATGCGCCAAGATCCGAAAATTCTGGCCTCAATGGGCACTCAACTTTTGAGCATTGTACAAACAATGGTGACATGAGCACTACGAGGTTAATTGGAACATCTTTGCAAGAAAGTCCAACCTGTGGTTCTCTGTGTTATAAGCCACCACAGTTAGATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATATCTGCCAGCAGAATGAGTACTGTTCGAGTCCAACTTTGTCACCTATTGGCTTCTTCACTCCACCTCGTGTGAAGGGTAGTGAATTATGCACTGAGACTCCTGAATCTATATTGAAAAGGGCTGCTAATACTTTTCCCAATACTCCTTCCATATTGAGGAGGAGGAGAAATGGGGTCCAAGCACTTCCTAGTCCTAGTAAAGTTTTGAAGGTAGATAATGATCCACGTTCTGCTAATAAAACAGAGAGAGCCAATGAGGATTCTGGTTCAAGGCGTTTCTCCAGGAGTCCAGCAAGCCATGACAATGGTATTGACATTCCCAATAATAAGGCATTCAATGCATCTCCCCCATATAGGTTAAGATCCAAGAGAACAGGGATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCTTTTGACAAAGAGAAGAATGATGACAAGAGAAGCAGTATGATGACCGAAGATTGTTTGCATGAAAAAAAATTGGTGGCCACATAG 1683 0.4177 MAELVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAQSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVTVKDTIRRSASKSILVYSNKELNAAVETSSETTAISKLDDSGRNQFESSGTVREVGDSSSVPANESADSDCVECKPGPSNIDLSCSNSEQVSKANWRITYAPRSENSGLNGHSTFEHCTNNGDMSTTRLIGTSLQESPTCGSLCYKPPQLDGSVPIDSLYLNYICQQNEYCSSPTLSPIGFFTPPRVKGSELCTETPESILKRAANTFPNTPSILRRRRNGVQALPSPSKVLKVDNDPRSANKTERANEDSGSRRFSRSPASHDNGIDIPNNKAFNASPPYRLRSKRTGIVKSVEKQLEFAFDKEKNDDKRSSMMTEDCLHEKKLVAT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00567 560 FunFam Transcription factor MYB3R-2 165 231 - -
Spst1g00567 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 213 IPR017930 -
Spst1g00567 560 CDD SANT 166 209 IPR001005 -
Spst1g00567 560 MobiDBLite consensus disorder prediction 468 489 - -
Spst1g00567 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 106 IPR017930 -
Spst1g00567 560 MobiDBLite consensus disorder prediction 270 304 - -
Spst1g00567 560 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
Spst1g00567 560 MobiDBLite consensus disorder prediction 38 52 - -
Spst1g00567 560 Pfam Myb-like DNA-binding domain 164 207 IPR001005 -
Spst1g00567 560 Pfam Myb-like DNA-binding domain 60 106 IPR001005 -
Spst1g00567 560 Pfam Myb-like DNA-binding domain 112 158 IPR001005 -
Spst1g00567 560 SUPERFAMILY Homeodomain-like 61 123 IPR009057 -
Spst1g00567 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 162 IPR017930 -
Spst1g00567 560 SUPERFAMILY Homeodomain-like 109 205 IPR009057 -
Spst1g00567 560 MobiDBLite consensus disorder prediction 270 298 - -
Spst1g00567 560 MobiDBLite consensus disorder prediction 21 65 - -
Spst1g00567 560 FunFam Transcriptional activator Myb isoform A 59 111 - -
Spst1g00567 560 Gene3D - 59 111 - -
Spst1g00567 560 ProSiteProfiles Myb-like domain profile. 55 106 IPR001005 -
Spst1g00567 560 MobiDBLite consensus disorder prediction 443 513 - -
Spst1g00567 560 MobiDBLite consensus disorder prediction 490 504 - -
Spst1g00567 560 CDD SANT 63 106 IPR001005 -
Spst1g00567 560 FunFam Transcriptional activator Myb isoform A 112 164 - -
Spst1g00567 560 ProSiteProfiles Myb-like domain profile. 107 158 IPR001005 -
Spst1g00567 560 MobiDBLite consensus disorder prediction 535 560 - -
Spst1g00567 560 CDD SANT 114 158 IPR001005 -
Spst1g00567 560 SMART sant 163 211 IPR001005 -
Spst1g00567 560 SMART sant 59 108 IPR001005 -
Spst1g00567 560 SMART sant 111 160 IPR001005 -
Spst1g00567 560 Gene3D - 165 230 - -
Spst1g00567 560 PANTHER MYB PROTEIN-RELATED 60 132 - -
Spst1g00567 560 Gene3D - 112 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00567 Spst-Chr1 7328297 7334215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00567 5 552 MYB Transcription Factor Family AT3G09370 50.000 3.25e-158 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g00567 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00567 K09422 - gmx:778081 1024.23