Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00400 ATGGCTTACATGTGTGCAGATAATGGGAACCTTATGGCGATTGCCCAACAAGTGATCAAGCAAAAGCAGCAACAAGAGCAAGAACAACAACAACAACAGCATCAGCATCAACAGTTGTTGGGTATTAACCCTCTCTCTCTCACCCATCCATGGAACAACATGCACACCACTACTACCACTGCTACTTCTACTATTCCACCTCACTTGGGTTTCCCTCTTCCTCTCCCTCCCACCGATTTCACCGACCCTTTTCAAGTCGGGTCGGGTCCTGATAACCCTGATCCCGGGTTCCAGTTCCCTCCTCCTCTCGACCCTCATTCCGCCGCCTTCCGATTCTCCGATTTCGACAACGATGACTGGATGGACACCTTGATAGCCGGCGCTGACTCTCTCAATCTCCCCCCTCCACCTCCTCCCGATTTCTCCCTCAACCCGTTTTCCTCATGCTCGACCCGACTATCCCCTCCTTCGGATCTCAACCGGGTCATCTTCCCTTCCTCCTCTGAATCCCAGTCTCAACCTCACACCACCGCTGCTACCGCTTTTCAACTCCCCACCCTAACACCCACTGTCCCCAAAAACCCTCCACCACCGGCGAAACCCACTCCCCACCGAAACGACGCATCCGAAACGACGCCGTCGTCTCTGCATCCGCTTCTGAAAGCGTTAACGGAGTGTGCTCGTCTCGCTGAAACCGAACCGGATCAAGCCTCAGAATCTCTGACCCATCTCACCAAATCTGTGTCACAACATGGGAACCCTACTCAGAGGGTCGCTTTTTACTTCTCCCAAGCTCTAACCAACAAAATATCAGCAGAGAGAGAGAAAGAGAAGAACTTGCCAATGGTGGAACCAACTCCTACTTCTACTTCTGAGGAGTTGATACTCTCTTACAAAGCTCTAAATGATGCTTGCCCTTATTCCAAGTTTGCACATTTCACTGCAAACCAAGCTATTTTGGAAGCCACTGAAGGAGCCACAAAGATTCACATAGTTGATTTTGGGATTGTGCAAGGGATTCAGTGGGCTGCACTGTTGCAAGCATTTGCTACTCGCTCTTCAGGGAAGCCTCATAGCATAAGGATCTCTGGGATACCTGCTATGGCTCTTGGAACTTCACCTGGAGCTTCTCTCTCTGCCACTGGGAACCGTTTATCTGAGTTTGCAAAGCTTCTTGGCTTGAATTTTGAGTTTACACCCATTCTCACACCTATTCACCAGCTCAATGAGTCTAGCTTTTGCATTGAACCAAACGAGGCCTTGGCTGTGAACTTCATGCTTCAGTTGTACAATCTTTTGGATGAGACTCCAACTGCAGTGGAGACTGCACTTCGTTTGGCTAAATCTTTGAACCCCAAAATTGTGACTCTTGGGGAGTATGAAGCAAGCTTGACAAGGGTTGGCTTTTTCAACAGGTTCAAGACTGCATTGAAGTATTTCTCTGCTTTGTTTGAGTCTCTGGAGCCAAACATGGCTTTAGACTCACCTGAGAGGTTTCAGGTGGAGAGTCTTCTGCTTGGCCGGAGAATCGCCGGCGTGATTGGGCCAGAGTTGCCGGGGAGTGTGAGGGAAAGGATGGAGGACAAAGAACAGTGGAGGGTTCTGATGGAAAGTTGTGGTTTTGAATCAGTGAGTCTCAGCCATTATGCAATTAGTCAAGCTAAGATACTTTTGTGGAATTACAGTTACAGTTCTCTTTACTCACTTGTTGAATCTCAACCGGGTTTTTTGTCTCTGGCTTGGAAAGATGTTCCTCTATTGACTGTTTCTTCATGGCGTTAA 1782 0.4865 MAYMCADNGNLMAIAQQVIKQKQQQEQEQQQQQHQHQQLLGINPLSLTHPWNNMHTTTTTATSTIPPHLGFPLPLPPTDFTDPFQVGSGPDNPDPGFQFPPPLDPHSAAFRFSDFDNDDWMDTLIAGADSLNLPPPPPPDFSLNPFSSCSTRLSPPSDLNRVIFPSSSESQSQPHTTAATAFQLPTLTPTVPKNPPPPAKPTPHRNDASETTPSSLHPLLKALTECARLAETEPDQASESLTHLTKSVSQHGNPTQRVAFYFSQALTNKISAEREKEKNLPMVEPTPTSTSEELILSYKALNDACPYSKFAHFTANQAILEATEGATKIHIVDFGIVQGIQWAALLQAFATRSSGKPHSIRISGIPAMALGTSPGASLSATGNRLSEFAKLLGLNFEFTPILTPIHQLNESSFCIEPNEALAVNFMLQLYNLLDETPTAVETALRLAKSLNPKIVTLGEYEASLTRVGFFNRFKTALKYFSALFESLEPNMALDSPERFQVESLLLGRRIAGVIGPELPGSVRERMEDKEQWRVLMESCGFESVSLSHYAISQAKILLWNYSYSSLYSLVESQPGFLSLAWKDVPLLTVSSWR. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00400 593 Coils Coil 12 39 - -
Seca6g00400 593 ProSiteProfiles GRAS family profile. 210 593 IPR005202 -
Seca6g00400 593 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 179 588 IPR005202 -
Seca6g00400 593 MobiDBLite consensus disorder prediction 189 203 - -
Seca6g00400 593 Pfam GRAS domain family 220 593 IPR005202 -
Seca6g00400 593 MobiDBLite consensus disorder prediction 182 216 - -
Seca6g00400 593 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00400 Seca-Chr6 11593190 11595862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00400 1 593 GRAS Transcription Factor Family AT5G66770 57.143 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g00400 GRAS 1.8e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00400 - - adu:107477343 748.814