Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03739 ATGAGCTTTGGAAGCAGAGGGAAATTGAAAGACACAAGCTTTACGGCATCAGCTGAAAGCAAAATGAACACCTCCAAAACCACCACCAAGAAGGATAAGGCACTTGCTCAGTACAGTGCAGATGCTGAGATTCTTGCTGAGTTTGAGCAATCTGGTGTTTCTGGCAAATCATTTGACTATTCAAGGACGGTTCTTGATCCTCCCAGGTTAGTGTCTGGGGAGAAAATGACTGCATATTTGTCCAAAATCCAAAGGGGTGGTCTTATCCAACCCTTTGGTTGTATTCTAGTAATTGAAGAACCCACTTTTAGAATCATTGGGTTCAGTGAGAATTGTTTTCAATTGTTGGGTTTGGAGAGGAAAATTGATTCAAAACAGTTTGTGGGTTTGATTGGGGTTGATGCTACAACCCTGTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCCAGGGAAATTTCACTTTTGAACCCAATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCCATACTGCATAGAATTGATGTTGGGGTTGTCATTGATTTGGAGCCTGCAAGGTCAAGTGATCCTGCATTGTCACTTGCTGGGACAGTTCAGTCACAGAAGCTGGCTGTTAGGGCAATTTCAAGGCTGCAATCTCTTCCTAGTGAAGACATTGGTCTGTTGTGTGACACTGTTGTTGAGGAAGTGCAAAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGAAGGTCAGATTTAGAGCCTTACTTGGGTTTGCATTATCCTTCCACAGATATCCCTCAAGCTGCTCGCTTTTTGTTCAAGCAAAACCGGGTTAGGATGATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTAAAGAATTAAGGCAACCTCTTTGCTTGGTTAACTCAACCCTTAGGTCACCACATGATTGTCACACACAGTATATGGCTAATATGGGCTCAATTGCCTCTCTGGTTATGGCAGTTATAGTCAATGGAAATGATTCAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACTCTTCACCTCGGTATGTGCCTTTCCCAGTTCGTTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAAATGGCAGAGAAGAGAATTCTTAAAACACAAACCTTATTGTGTGACATGCTCCTACGTGATGCACCATTTGGAATTGTGACTCAATCCCCAAGTATCATGGATCTTGTTAAGTGTGATGGGGCTGCCTTGTATTATGATGGAAACTGTTGGTTGTTAGGCACAACCCCAACTGAATCACAAGTGAAAGACATTGCAGAATGGTTACTTAGTAATCATGGGGACTCCACAGGTTTGACTACAGATAGTTTGGCTGAAGCTGGTTATCCAGGTGCTGCTTTGCTGGGGGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAGGCATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTGAAATGGGGAGGAGCTAAGCACCATCCAGAGGATAAGGATGATGGAGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTAGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAACTAATCATGAGGGATTCATTCCAAGATACAGAGAACACTGGTCAAAAAACTCTAAATTATATACAGAAAAGTGACCCTGCAACGGGAGGAGGGGTGGATGAACTCAGTTCAGTAGCATTTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATTCAGGTGGCCTAATCAACGGATGGAATGTGAAAATTGCTGAATTGACAGGCCTGCAGACCAGTGAAGCTATGGGAAAATCCCTTGTAAATGAAGTAGTACACGCGGATTCACGTGAAACTGTTACAAATATTCTAAGCAGAGCCTTGCAAGGTCATGAGGACAAAAATGTTGAGATGAAAATGAAACATTTTGGGCTTCATGAACAAAAGGAAGTTGTATATCTCATGGTCAATGCCTGCACTAGTAGGGACTACACAAATGCTGTTGTTGGGGTATGCTTTGTTGGTCAAGACATCACTTATGAGAAAGTGGTTCTAGATAAGTTCATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCACTGATTCCACCCATATTTGCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTGAGTGGTTGGAAGAGAGATGAAGTCATAGGAAAAATGCTTCCTGGTGAAATCTTTGGAAGCTTTTGTCGATTGAAAGGTCAAGATACACTGACTAATTTTATGATTGTCCTGTATCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTATAGAGGCTTATATAACAGCAAACAAAAGGATTGATGCAGGTGGGAATATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCAACAGATGTGAATCAACCTTCTGAAAGACACAGGGCTAAAGGCAAGGAAAATATTTCTGAATCTAAGGAGTTAGCTTATATACTACAAGGGATGAAGAACCCTTTAAATGGTATACGATTCACACACAAACTTTTGGGAAATACAGTTGTCTCAGAAAACCAGAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAGATCATGGCAATTATTGAGGATACAGATTTAGGAAGTATTAGTGAAGGCACTTTGCAGCTAAGCATGGAAGAATTTCTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGGAAAAAATTTGCAGCTGTTTCATGAAATCCCTGATGAAATCAAAACACTTGCTCTTTATGGTGATAAGATTAGGCTTCAGGTGGTCTTGGCTGACATTTTGCTTAATGTAGTCAGCCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAAGTAATACAGGATGGCAATGAGTTTATCCATCTGAAGTTCAGGTACACAAACCAAGAATTTATTTCTGTTCTTAGATTCATTTACAGAATAACTCATTCTGGTCAAGGTCTTCCTTCTACTGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGGCTATATATGTCCAGGAAAATCCTCAGTAGGATGAATGGTCATGTAAACTATGTAAGAGAACAAAACAAGTGTTATTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGATTTTGAAAGCAGAGACAAGCATGTCAAGTTAG 3429 0.4071 MSFGSRGKLKDTSFTASAESKMNTSKTTTKKDKALAQYSADAEILAEFEQSGVSGKSFDYSRTVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCILVIEEPTFRIIGFSENCFQLLGLERKIDSKQFVGLIGVDATTLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGTVQSQKLAVRAISRLQSLPSEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPSTDIPQAARFLFKQNRVRMICDCHAKPVKVIQSKELRQPLCLVNSTLRSPHDCHTQYMANMGSIASLVMAVIVNGNDSTRLWGLLVCHHSSPRYVPFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGNCWLLGTTPTESQVKDIAEWLLSNHGDSTGLTTDSLAEAGYPGAALLGDAVCGMATARINSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSFQDTENTGQKTLNYIQKSDPATGGGVDELSSVAFEMVRLIETATVPIFGVDSGGLINGWNVKIAELTGLQTSEAMGKSLVNEVVHADSRETVTNILSRALQGHEDKNVEMKMKHFGLHEQKEVVYLMVNACTSRDYTNAVVGVCFVGQDITYEKVVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLSGWKRDEVIGKMLPGEIFGSFCRLKGQDTLTNFMIVLYRGISGQDSEKLPFGFFDRNGEFIEAYITANKRIDAGGNMIGCFCFLQIVSTDVNQPSERHRAKGKENISESKELAYILQGMKNPLNGIRFTHKLLGNTVVSENQKQFLDTSDACERQIMAIIEDTDLGSISEGTLQLSMEEFLLGNILDAIVSQVMMLIRGKNLQLFHEIPDEIKTLALYGDKIRLQVVLADILLNVVSHTPSPNGWVEIKISPGLKVIQDGNEFIHLKFRYTNQEFISVLRFIYRITHSGQGLPSTVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVNYVREQNKCYFLIDLELRTRKERQRILKAETSMSS. 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03739 1142 SMART HKATPase_4 997 1126 IPR003594 -
Seca5g03739 1142 FunFam Phytochrome 757 865 - -
Seca5g03739 1142 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 224 384 IPR016132 -
Seca5g03739 1142 NCBIfam PAS domain S-box protein 617 732 IPR000014 -
Seca5g03739 1142 SUPERFAMILY GAF domain-like 204 390 - -
Seca5g03739 1142 SUPERFAMILY GAF domain-like 402 580 - -
Seca5g03739 1142 PRINTS Phytochrome signature 324 345 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 509 528 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 706 723 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 424 444 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 239 258 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 139 161 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 632 647 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 613 629 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 542 560 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 PRINTS Phytochrome signature 726 746 IPR001294 GO:0006355|GO:0009584
Seca5g03739 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 616 724 IPR035965 -
Seca5g03739 1142 ProSiteProfiles PAS repeat profile. 744 796 IPR000014 -
Seca5g03739 1142 CDD HATPase_Phy-like 996 1124 IPR044767 -
Seca5g03739 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 758 860 IPR035965 -
Seca5g03739 1142 CDD PAS 621 728 IPR000014 -
Seca5g03739 1142 FunFam Phytochrome 606 738 - -
Seca5g03739 1142 Pfam PAS fold 613 728 IPR013767 GO:0006355
Seca5g03739 1142 Pfam PAS fold 744 863 IPR013767 GO:0006355
Seca5g03739 1142 Pfam Phytochrome region 407 582 IPR013515 GO:0006355|GO:0009584
Seca5g03739 1142 Pfam His Kinase A (phospho-acceptor) domain 887 949 IPR003661 GO:0000155|GO:0007165
Seca5g03739 1142 PIRSF Phytochrome_conventional 11 1133 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Seca5g03739 1142 CDD HisKA 885 940 IPR003661 GO:0000155|GO:0007165
Seca5g03739 1142 PANTHER OS08G0260000 PROTEIN 76 946 - -
Seca5g03739 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 193 IPR035965 -
Seca5g03739 1142 ProSitePatterns Phytochrome chromophore attachment site signature. 324 333 IPR013516 -
Seca5g03739 1142 Gene3D PAS domain 757 870 - -
Seca5g03739 1142 ProSiteProfiles PAS repeat profile. 610 681 IPR000014 -
Seca5g03739 1142 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 960 1122 IPR036890 -
Seca5g03739 1142 ProSiteProfiles Histidine kinase domain profile. 892 1126 IPR005467 -
Seca5g03739 1142 Gene3D PAS domain 82 327 - -
Seca5g03739 1142 Gene3D - 928 1118 IPR036890 -
Seca5g03739 1142 Gene3D - 399 572 IPR043150 -
Seca5g03739 1142 SMART HisKA_10 885 949 IPR003661 GO:0000155|GO:0007165
Seca5g03739 1142 Gene3D PAS domain 612 732 - -
Seca5g03739 1142 FunFam Phytochrome 399 529 - -
Seca5g03739 1142 CDD PAS 755 863 IPR000014 -
Seca5g03739 1142 Gene3D - 205 555 IPR029016 -
Seca5g03739 1142 SMART gaf_1 224 404 IPR003018 GO:0005515
Seca5g03739 1142 Pfam GAF domain 224 394 IPR003018 GO:0005515
Seca5g03739 1142 SMART pas_2 612 679 IPR000014 -
Seca5g03739 1142 SMART pas_2 743 813 IPR000014 -
Seca5g03739 1142 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1122 IPR003594 -
Seca5g03739 1142 Pfam PAS fold 78 191 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03739 Seca-Chr5 94369932 94375808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03739 11 1126 Histidine Kinase Gene Family AT4G18130 62.157 0.0 1469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03739 K12123 - gmx:100808192 1987.23