Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01758 ATGGGTTGCGTGCTCGGGACACCGGCTGGTGACGGAGCTCAGAGCCGTCGCCGGAACGGCCAGCGTAACGTTGCTTCTGACGCAGGTAATAATGCCGTTAGGGTTCGGGAGAGTCGACTAACGAATCGCCACACCGGCGATTTTCCAGGGACTCTTCCGGCGCCGGAGCGCCGGAAACCTAGGCTCGATCCGTGCGCGGTGAATCAACAAGGTTGGCCGTCTTGGTTGATGGCCGTCGCCGGCGATGCAATCGGCGATTGGACTCCTCGCCGTGCCAACACATTCGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTATAAGGCTAAAGACCTTCTTACGGGGAAGATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGGGAGATACTTGTTCTGCGGAGGCTTGATCACCCCAATGTTGTAAAGCTTGAAGGCTTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTATTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCAGCTGGCCAAGGTGTTAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCAAGGTGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTCTATGACCCTAAGCAAAAGCAGCCCATGACAAGCAGAGTTGTGACCCTTTGGTATCGCCCCCCTGAGCTTCTTCTTGGGGCTACATTATATGGTGTAGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGCACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGTGGCTCTCCATCTGAGGAATATTGGAGGAAGTATAGATTGCCGAATGCTACAATCTTTAAGCCACAGCAGCCATATAAACGTAGTATCTCAGAAACATTCAAGGATTTTCCTCCATCATCACTGCCTCTAATTGAAACTCTTCTTGCAATAGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTAAATAGTGAAGTGAGTGATCCCTGTGGGTTAACCTTATATTTGGGATTTAAAATATTTCACATCTGTATTTTTATCTGCAGTTCTTTACCACTGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGACGTAA 1278 0.4742 MGCVLGTPAGDGAQSRRRNGQRNVASDAGNNAVRVRESRLTNRHTGDFPGTLPAPERRKPRLDPCAVNQQGWPSWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSQGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKQPMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATIFKPQQPYKRSISETFKDFPPSSLPLIETLLAIDPDDRGTASAALNSEVSDPCGLTLYLGFKIFHICIFICSSLPLSPMLVNHRVCQSILPAKNWT. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01758 425 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Seca4g01758 425 MobiDBLite consensus disorder prediction 14 28 - -
Seca4g01758 425 MobiDBLite consensus disorder prediction 1 63 - -
Seca4g01758 425 CDD STKc_CDK9_like 95 377 - -
Seca4g01758 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca4g01758 425 PANTHER CELL DIVISION PROTEIN KINASE 93 379 - -
Seca4g01758 425 SUPERFAMILY Protein kinase-like (PK-like) 89 376 IPR011009 -
Seca4g01758 425 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01758 425 ProSiteProfiles Protein kinase domain profile. 95 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01758 425 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Seca4g01758 425 FunFam probable serine/threonine-protein kinase At1g54610 178 384 - -
Seca4g01758 425 Gene3D Transferase(Phosphotransferase) domain 1 178 383 - -
Seca4g01758 425 Pfam Protein kinase domain 95 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01758 425 FunFam probable serine/threonine-protein kinase At1g54610 82 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01758 Seca-Chr4 28729551 28734310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01758 87 381 Core Cell Cycle Gene Families AT5G10270 53.355 2.93e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca4g01758 Pkinase 9.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01758 K08819 - gmx:100793033 703.36