Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00155 ATGGGAGGTAACCGTGGAGTCCTTTCCGGCGAGTGTGACGCCGACGACTCGGGGTCCTTTTCCAATGCTACAACATTACAGGGTGTCAAAAATGAAACTTTGAATGTTATACAACTTGAGGTGAAGGGTGACCAGCAAAGGCTCATATTTCCTGGGAAGCAATTGAAAGATGGTTACACTCTTGCAGATTACAACATTCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGCCGATCTTCTGGTCGCTATGGTGTTTTTCCTGCAAGAATGGGTTCTCTCCTCCGGCGCCGTAATAGCCATCGTTGTGTAGCTGATAACCAGAGGCATGGCAGTGGAGTGCATGACGGTGTGTAG 354 0.4887 MGGNRGVLSGECDADDSGSFSNATTLQGVKNETLNVIQLEVKGDQQRLIFPGKQLKDGYTLADYNIQKESTLHLVLRRSSGRYGVFPARMGSLLRRRNSHRCVADNQRHGSGVHDGV* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00155 117 SMART ubq_7 27 77 IPR000626 GO:0005515
Rops8g00155 117 Pfam Ubiquitin family 25 78 IPR000626 GO:0005515
Rops8g00155 117 PANTHER UBIQUITIN 40 81 - -
Rops8g00155 117 Gene3D - 11 82 - -
Rops8g00155 117 ProSiteProfiles Ubiquitin domain profile. 19 81 IPR000626 GO:0005515
Rops8g00155 117 SUPERFAMILY Ubiquitin-like 21 80 IPR029071 -
Rops8g00155 117 MobiDBLite consensus disorder prediction 1 25 - -
Rops8g00155 117 PRINTS Ubiquitin signature 58 79 IPR019956 -
Rops8g00155 117 PRINTS Ubiquitin signature 37 57 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00155 Rops-Chr8 3429749 3430182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00155 41 104 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 56.250 1.84e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00155 K02927 - ppp:112295416 72.0182