Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00847 ATGGAACGTCGTTCTCGTCAACGTCCTTCCAATGCCAAAGTTTCTGCTTCAGATTCTGGTTTTGATTCCAATTATGAAGATTTAGGTGGAGAATCGAGTGGTGTAGATAAAGCGGTGGAGCACGGAGATAATGATGAAGACTCAATGGTTCAGCAACAATCAGTTTCTTCTGATTTGACGGGAACTAAAATGGAGAAAAACGTGAAGAGAGGAAGGAAAAAGAAACCTAAGCCAGTGTTGTTGTGGATGATATGGGAAGAGGAGCAAGAGAGATTCATTAATGAGCATATATCAGAAGATGTTGACTTAGATGATCAGAGTGAAGTAATGAAAGAAACTGCTGAGGCGTCCTCTGATCTGACTATACCTTTGCTTAGATACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGAGGCTAGAGGTGGAATACTTGCGGATGAAATGGGAATGGGGAAGACTATTCAAGCAATCGCCCTTGTCCTTGCCCAACGTGAATTCCACCAAAGGAGTTGTGAACCAGATGAACCCGTACCCTCATCTTTACCGTGTTCATCAAGAGTGTTGCCCAGGATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATCGATCGAGTTACTTCGAAGGGAAGCACCAAGGTGCTGGTTTATCATGGGGCTAGAAGGGGGAAGAGTGGGGAACAGTTCTCGGATTATGATTTTGTAATAACGACATACTCTACTGTTCAGTCTGAGTGCAAGAAGTACATAATGCTTCCTAAAGAGATATGTCAGTATTGTGGAAAATCAATTTTGCAGGGGAAGTTGAATTATCATCAGCACAATTTTTGTGGACCTGATGCTGTGAGAACAGAAAAACAATCCAAGAAAGTTAAGAAACAGAAAAGGCAAGTTATAAAAAAAGATTCAGATGCCTCAGGCAGGGATATGTCATTTCTACATGTTGTAAAGTGGCAGCGGATCATATTGGATGAGGTTCGTTGTCATCATTATGATTCGAAATTCTACCGCATGGATTCTTTGAAGTTTCCATAA 1068 0.4157 MERRSRQRPSNAKVSASDSGFDSNYEDLGGESSGVDKAVEHGDNDEDSMVQQQSVSSDLTGTKMEKNVKRGRKKKPKPVLLWMIWEEEQERFINEHISEDVDLDDQSEVMKETAEASSDLTIPLLRYQKEWLAWALKQENSEARGGILADEMGMGKTIQAIALVLAQREFHQRSCEPDEPVPSSLPCSSRVLPRIKGTLVICPVVAVTQWVNEIDRVTSKGSTKVLVYHGARRGKSGEQFSDYDFVITTYSTVQSECKKYIMLPKEICQYCGKSILQGKLNYHQHNFCGPDAVRTEKQSKKVKKQKRQVIKKDSDASGRDMSFLHVVKWQRIILDEVRCHHYDSKFYRMDSLKFP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00847 355 SMART ultradead3 120 333 IPR014001 -
Rops7g00847 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 346 IPR027417 -
Rops7g00847 355 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 355 IPR014001 -
Rops7g00847 355 MobiDBLite consensus disorder prediction 33 47 - -
Rops7g00847 355 Gene3D - 126 272 IPR038718 -
Rops7g00847 355 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 35 337 - -
Rops7g00847 355 MobiDBLite consensus disorder prediction 48 62 - -
Rops7g00847 355 Pfam SNF2-related domain 82 336 IPR000330 GO:0005524|GO:0140658
Rops7g00847 355 CDD DEXDc_SHPRH-like 124 336 - -
Rops7g00847 355 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00847 Rops-Chr7 11287938 11289506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00847 67 342 RAD5 or RAD16-like Gene Family AT1G05120 50.323 7.38e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops7g00847 SNF2_N 5.7e-32 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00847 K15083 - gmx:100798333 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00847 7 11287938 11289506 Rops7g00847 7 11287938 11289506 ECH