Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00178 ATGGGAAAGCGAGTCAGGGAGAAAGAGTATGCAATGTCTAGTGGAAACAATAGTCATCATACTCATCCAGGAAGAGTGTGGGGAATTCTTCACATTATAAAGTACCATCATTGGAGGCATGTCAAGAGAAGGCTTACACATAGGAGGCATGGTGGTGGAAGCCACAATCCAAGGTATGAACTTCCAGGAACTTCTAACGATTCTGGAGTTGATAATATGGCGGAAGATTATAAGCCAAATGCAACATTATCTAATGGTGAAGAAAAGGTGGTACACCCCACTCCACCAGCCAAACATTCTATTAGATCCAGAATAAAAGCACTTCTTCCTGAAGATAGAAAGAAAGGTTCACATAAGAGAAGCTCAACCTGTCCTGCAAAGTCACAACAAAACCATGTTGATCCTGTTCATCACACAGAAGTTGATCCACTTAGTGAAATGTTATTAACTGTTGAAAGTCCTGAACCAGTTCTAGAAACCTTTCAAAAGCATCTTGCTTCTGGCACATTGAATGAATTGTCACCAGTTTTCTCTGGGAAACCAGTTACCAACAGTGACAAATGTGTAGATTGTGGCACAATGTTTTCTAGTGACAATTTGGAACATAACAAGATTCATAAGCATCATAACCAATGGACTGATGCAAAAGACTTGAGCAACACTAATAATCAAGATGGTGTGCCAGAAGAGAAGTTGATCAATGCAAAGATTCTTACAACTGATGCTTCACCCCATCTTTTCAAGGATTTTCTTGATGCTCTTGATGTGATCAACACAAACAAGGACTTCCTATTGAAATATATACAAGATCCAGGCTCTCCCTTGCCATTTGAAACTCATAATCAACATGCTTTCAGTGGTAAATCAAGAAGAACCAAATCTATCTCATTTCCTGTATCTGGTTCATCATCAGGAAGCAAAGATTCTGAGCAAGGCCAACTCATAGACCAAATGGTAGATGAATGGTTCAATGAAAAAGGGGAGGGACAATTACAAATTGAAAATCACATGCAAAATGTATCTAGGTCTACAGAAGCTTTTCACCAAAGGTCCATATCATCAGGTTCTTCAGATAAAGTTGATCAATTCCACAATCCAGATCAACAAAGGGGTGAAAGAGATTATAATCTTTCATCTGTTTCATCTCAGGTTCCCAACCATGTGAAAACTAACCATTTCAAGGATCTTAGAAAGAAGATAAAGCATATAATTGAAGAAAGCAAAAATGAAAAGCATCGCATTACCATGGATGCTATACTTGACAAAATTCCTCATGGGAATAGACTTTCCAAGAATGTTAAAAAGTTGATCCGTGACCAATCCAAAGACCCCACAGTTAATGGAGAAAGAAAAGACAGTGCCATGAATGTTCATGGTAGTCGTCTTTCTTCTAACTCCTTCAATAAGCGCCAACCACCAAACATGAGAACTTCATCTCTGAGAGAATCGGTTAATAGATATTCTCAGCTGTATGAGACTTGTTTTAACAATGAAGTCAAGAATCCTAAGAGTGATAGCTTAAGATTGAAAACAGAAGAGGGAAGTTCAATACTAAAGACCCCAAAATCCTTTAAAAGGTTTCTTTCATTACCTAATCTAAAATCTTACTTCAACCAAAGTGAGGAGCCTTCTGTTTTTTTATCACCCCAGAATCAAATTAAGAAATCTGGAGATGGAACCGCAAACACAAGTGCTACTGATCAACAGATGAGTATTGATGATGACCCAAAGAGTCAAAGTCTGCCACCTATGCTTGCTGATGACACAAATCAAGAAAGCATCTTGAATGTTGACCAAAAGCAACTTCCAGTAAGGAGTGCTTCAAAATCAAAATCAGATGATAATAATGAAGCAAAGGAAGATAAGAGCATAGGAATTGATGGTTTGGGAAACTTGAGAGACAGTGATGGTGCTTTTTGCAATGAGCAAGACATTGGACCTGCAACAGAATCTAGTCCTCTGCTGGTAGAAGCAAACTCAGCCTTCTCTTCTGACACGAGTTTCCTAGATGCTACATTTGAGTTGGAGAACTTGGAAGAATCAGATTCCCAATCAAAGCCAGGGTCAGTTGATGGATTGGATAATATGGCTGAGCAACAAGAGGCTAAAGTGGATCCCCCAGAGGTGGTTGAGAATGGAGAGAATTTTCAGAAACTTGGAACTCTAAGCAAACGTTTCAACCATGAAATTCCATGTTTTAAAGTGGATGCTAGTAATGAGGCTGCATTTAATTATGTGAGAAAAGTTTTAGAGCTCTCTGGGTTCACTGGCCATGAATCTCATGGGTTATGGTATTCTGATGACCAACCAGTTGATCCTTCAGTATATGAAGAATTAGAGGGGTGCTTGCTTTTGGATCCTGATTGTTCTGGTAATTGTGATGAAGATGGACAATGTAATCACCTGCTTCTGTTTGATATAATCAATGAGGGATTATTGGAGATTTTTGGGAGATCATACAACTATTATCCAAGACCCTTGTCTTATCTTTCCCATGTTAATCCATTGCCAGTTGGAGATAATGTTCTCCATAAAGTATGGAAACATATTAGTTGGAATTTGAACTCAGCAACATCTGAGGCTTACCTTTCATTGGATTACTATGTGAGCAAAGATCTAGCAAGAAATGATGGGTGGATGAATCTCCAATTTGATTCTGAATGTGTAGGGCTTGAGTTAGATGACTTGATTTTTGATGATCTTTTGGAGGAAATTATCTCCACTTAA 2727 0.385 MGKRVREKEYAMSSGNNSHHTHPGRVWGILHIIKYHHWRHVKRRLTHRRHGGGSHNPRYELPGTSNDSGVDNMAEDYKPNATLSNGEEKVVHPTPPAKHSIRSRIKALLPEDRKKGSHKRSSTCPAKSQQNHVDPVHHTEVDPLSEMLLTVESPEPVLETFQKHLASGTLNELSPVFSGKPVTNSDKCVDCGTMFSSDNLEHNKIHKHHNQWTDAKDLSNTNNQDGVPEEKLINAKILTTDASPHLFKDFLDALDVINTNKDFLLKYIQDPGSPLPFETHNQHAFSGKSRRTKSISFPVSGSSSGSKDSEQGQLIDQMVDEWFNEKGEGQLQIENHMQNVSRSTEAFHQRSISSGSSDKVDQFHNPDQQRGERDYNLSSVSSQVPNHVKTNHFKDLRKKIKHIIEESKNEKHRITMDAILDKIPHGNRLSKNVKKLIRDQSKDPTVNGERKDSAMNVHGSRLSSNSFNKRQPPNMRTSSLRESVNRYSQLYETCFNNEVKNPKSDSLRLKTEEGSSILKTPKSFKRFLSLPNLKSYFNQSEEPSVFLSPQNQIKKSGDGTANTSATDQQMSIDDDPKSQSLPPMLADDTNQESILNVDQKQLPVRSASKSKSDDNNEAKEDKSIGIDGLGNLRDSDGAFCNEQDIGPATESSPLLVEANSAFSSDTSFLDATFELENLEESDSQSKPGSVDGLDNMAEQQEAKVDPPEVVENGENFQKLGTLSKRFNHEIPCFKVDASNEAAFNYVRKVLELSGFTGHESHGLWYSDDQPVDPSVYEELEGCLLLDPDCSGNCDEDGQCNHLLLFDIINEGLLEIFGRSYNYYPRPLSYLSHVNPLPVGDNVLHKVWKHISWNLNSATSEAYLSLDYYVSKDLARNDGWMNLQFDSECVGLELDDLIFDDLLEEIIST* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00178 908 PANTHER PROTEIN TRM32 1 907 IPR044257 -
Rops6g00178 908 MobiDBLite consensus disorder prediction 340 362 - -
Rops6g00178 908 Pfam Domain of unknown function (DUF4378) 743 904 IPR025486 -
Rops6g00178 908 MobiDBLite consensus disorder prediction 583 609 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 541 576 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 441 480 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 340 381 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 104 119 - -
Rops6g00178 908 Pfam Protein of unknown function (DUF3741) 230 273 IPR022212 -
Rops6g00178 908 MobiDBLite consensus disorder prediction 1 23 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 457 480 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 541 651 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 278 311 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 610 627 - -
Rops6g00178 908 MobiDBLite consensus disorder prediction 46 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00178 Rops-Chr6 4203050 4208210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00178 648 898 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 43.511 1.15e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00178 - - gmx:100807303 1171.76