Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01472 ATGGATCGAGGGGACCAAATGGCATCATTATCTGGGCCTGCTGCATCTTACTATATGCAGAGAGGAATACCTGGTTCTGGAAACCAACCTGAATTGCACAATTCACCTAACATTCGTCCACTGTCGAATCCTAATCTACCATTTCAATCAAGCATTGGGGGTGGTACCACCATTGGATCCACCACATTGCCATTGGAATCTTCAGGAATTTCATCTCAAGGTGTCAATGTGAGTGCTCCTTCTGTGGCTGCACCTGGGGAATCTGTCAAAAGGAAGAGAGGAAGGCCCAGAAAATATGGGCCTGATGGAACTGTGTCATTGGCATTGACTCCAACACCAGCTAGCCATCCTGGAGCCTTAACCCAAGGCCAGAAACGTGGTAGAGGGCGCCCCCCTGGGTCGGGGAAGAAACAGCAGCTAGCTTCTCTTGGTTCATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCACATGTCATCACTGTTGCGATTGGAGAAGACATTTCAACAAAACTCATGGCATTTGCTCAGCAGGGACCTAGAACTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAACTTCAGGGGGCAGCGTTACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTATTTGCTTGCTGATAGTGGTGGTTCCCGCAATCGAACTGGTGGATTAAGTGTTACCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTACTTATTGCAGCAAGCCTGGTTCAGGTGATAGTTGGGAGCTTTATGTGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAAGATTCTTCAGAAGGTGCAGAAGTTGCTGTAGAGCCAGATCATCAGGTAGTGCATAATCCAGTTGCAGTGAATAGCATTCCCCCAAATCAAAATCTTACTCCAAACTCATCTCTAAGTCCGTGGCCTGCATCGCGACCGTTGGATATGCGTAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1035 0.4773 MDRGDQMASLSGPAASYYMQRGIPGSGNQPELHNSPNIRPLSNPNLPFQSSIGGGTTIGSTTLPLESSGISSQGVNVSAPSVAAPGESVKRKRGRPRKYGPDGTVSLALTPTPASHPGALTQGQKRGRGRPPGSGKKQQLASLGSLMSGSAGMGFTPHVITVAIGEDISTKLMAFAQQGPRTICILSANGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLADSGGSRNRTGGLSVTLASPDGRVIGGGVGGVLIAASLVQVIVGSFMWGGSKTKNKKKEDSSEGAEVAVEPDHQVVHNPVAVNSIPPNQNLTPNSSLSPWPASRPLDMRNSHIDIDLMRG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01472 344 Gene3D - 157 294 - -
Rops4g01472 344 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Rops4g01472 344 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Rops4g01472 344 MobiDBLite consensus disorder prediction 307 327 - -
Rops4g01472 344 FunFam AT-hook motif nuclear-localized protein 1-like 157 288 - -
Rops4g01472 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Rops4g01472 344 MobiDBLite consensus disorder prediction 27 79 - -
Rops4g01472 344 ProSiteProfiles PPC domain profile profile. 151 295 IPR005175 -
Rops4g01472 344 MobiDBLite consensus disorder prediction 1 141 - -
Rops4g01472 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 273 - -
Rops4g01472 344 CDD DUF296 156 270 IPR005175 -
Rops4g01472 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 70 319 IPR039605 GO:0003680
Rops4g01472 344 MobiDBLite consensus disorder prediction 307 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01472 Rops-Chr4 37376077 37381912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01472 1 344 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.552 2.63e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01472 - - gmx:100799791 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01472 4 37376077 37381912 Rops4g01472 4 37376077 37381912 ECH
Rops8g01176 8 25705196 25711798 Rops4g01472 4 37376077 37381912 PCT