Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02055 ATGGCTTCTCCCCTGTTTCCCTTGCTACTCTGTTTCATGCTCTGCATTTCACACTCTTCTGAAATGCTTCTATTACCCCTAACACACTCATTATCCAAAACCCAATTCAATAGTACCCATCACCTCCTCAAATCCACCTCCACCCATTCAGCATCACGCTTCCACTTCCACCGCCATCACCAACGCCACAGACAAGTCTCTCTTCCACTTTCCCCAGGAAGTGACTACACCCTGTCCTTAAACTTAGGGTCCCACCCATCACAAACCATAACTCTTTACATGGACACAGGTAGTGACCTAGTTTGGTTCCCTTGCGCTCCATTCGAGTGCATACTCTGTGAAGGAAAACCAAACATAACAAAACCCCCAAACATAACCCAAACCGACACCGTTTCATGTCAATCCCCTGCATGTTCTGCAGCACACGCTTCCATGTCTTCCCGTGATCTCTGCGCAATCGCACGTTGTCCCTTAGACTCCATTGAAACCTCTGATTGTTCTTCTTCTTCATGTCCTCCATTTTACTATGCTTATGCTGATGGAAGCTTCATCGCTCGTCTCTATCACCGTACTCTCTCAATCTCTTCTCTTCTTCTCAAAAATTTCACCTTTGGTTGTGCCCACACCGCACTCGCTGAACCCACCGGCGTCGCTGGTTTCGGTCGTGGCCTTTTGTCTCTTCCTGCTCAACTCGCTACGTTCTCACCACAACTGGGTAATCGTTTTTCTTATTGTTTGGTATCTCACTCTTTCGACGGAGAACGAGTTCGTCGACCAAGTCCACTCATTCTTGGTCGCTACGAAGCTCCAAATGACGCCGTTGAGTTTGTTTACACTTCCATGCTTCGGAATCCCAAGCACCCTTATTTCTACTGCGTGGGGCTCGTCGGAATCTCCGTCGGGAAGAGGATTATTCCGGCGCCGGATATGCTGAAGAGGGTCGACGGAAAGGGAAACGGCGGCATGGTGGTTGATTCTGGCACAACTTTCACGATGTTGCCGGCGAGTTTGTATAAGGCGGTGGTGACTGAGTTCGATCGCCGAGTCAGGCGAGTTCACAAGCGAGCGAGTGAAATTGAAGACAAAACGGGTCTCGGGCCGTGTTATTATTTGGACGGGTTAGTGGAGATTCCTGCAGTGACGTTGCATTTTGTGGGGAATAATTCCAATGTGGTGCTGCCTAGGAAGAACTATTTTTACGAGTTTTTTAACGGTGGTGATGGGGTGAAGAGAAAAGGGAAAGTGGGGTGCATGATGCTGATGAACGGTGGTGATGAGGAGGAGTTAAGTGGTGGACCCGGGGCCACGCTTGGGAATTACCAACAACAAGGCTTTGAGGTTGTTTATGACTTGGGAAAGCAGCGCGTGGGTTTCGCCAAGAGGCAATGCGCGTCGCTTTGGAATAGCCTCAACCATGAGAAGAACTAG 1428 0.493 MASPLFPLLLCFMLCISHSSEMLLLPLTHSLSKTQFNSTHHLLKSTSTHSASRFHFHRHHQRHRQVSLPLSPGSDYTLSLNLGSHPSQTITLYMDTGSDLVWFPCAPFECILCEGKPNITKPPNITQTDTVSCQSPACSAAHASMSSRDLCAIARCPLDSIETSDCSSSSCPPFYYAYADGSFIARLYHRTLSISSLLLKNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATFSPQLGNRFSYCLVSHSFDGERVRRPSPLILGRYEAPNDAVEFVYTSMLRNPKHPYFYCVGLVGISVGKRIIPAPDMLKRVDGKGNGGMVVDSGTTFTMLPASLYKAVVTEFDRRVRRVHKRASEIEDKTGLGPCYYLDGLVEIPAVTLHFVGNNSNVVLPRKNYFYEFFNGGDGVKRKGKVGCMMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLGKQRVGFAKRQCASLWNSLNHEKN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02055 475 CDD pepsin_A_like_plant 76 463 IPR034161 -
Rops1g02055 475 Gene3D Acid Proteases 61 265 IPR021109 -
Rops1g02055 475 Gene3D Acid Proteases 267 470 IPR021109 -
Rops1g02055 475 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 322 333 IPR001969 GO:0004190|GO:0006508
Rops1g02055 475 ProSiteProfiles Peptidase family A1 domain profile. 76 459 IPR033121 -
Rops1g02055 475 PANTHER ASPARTYL PROTEASES 8 457 IPR001461 GO:0004190|GO:0006508
Rops1g02055 475 FunFam Probable aspartyl protease At4g16563 66 264 - -
Rops1g02055 475 Pfam Xylanase inhibitor N-terminal 76 249 IPR032861 -
Rops1g02055 475 SUPERFAMILY Acid proteases 71 468 IPR021109 -
Rops1g02055 475 Pfam Xylanase inhibitor C-terminal 291 459 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02055 Rops-Chr1 41365202 41366895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02055 45 466 Miscellaneous Gene Families AT1G77480 26.327 6.47e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02055 - - gmx:100807884 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02055 1 41365202 41366895 Rops1g02055 1 41365202 41366895 ECH
Rops1g02055 1 41365202 41366895 Rops2g04263 2 77710191 77711961 PCT