Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00844 ATGGGGGATCTGGAAAAAATGGGCAGAGAACTCAAATGTCCCATCTGTTTAAGCTTGCTGGATTCTGCTGTTTCACTTACCTGCAATCATCTTTTCTGCAAGTCATGTATATACAAGTCGATGAAATCAGCCTCTGCTTGCCCCGTCTGTAAAATACCCTTCACTCGTCGAGAGGTTCGCCCTGCTCCTCATCTTGACAACTTGGTCACCATCTACAAAAGCATGGAAGCTGCTTCTGGTACTACCATATTCGTCACCCAGAATGTACCTCCCAATGAAGAAAAGCAATGTGAAGGTGATGCTGGCTTTGGTGAGAAGGAAGCTGGTGGAACTCATGAAAATCAAGCACGGGAGAAAAAAAGCCGGAGGGGAAAGAAGTCAAGGAAGAAGAATAAGACCAGCATGGAAAGTTCAGGTTCTGACATTGCCAAACCTTCTTTTCCAGCAAAGAAAAGGGTTCAGGTGCCTCAAAATATTCTTGAGGAAACTCCATTAAAGAATTTGAAGATTGGAGACTATCTTAGTGAAATTGACAAAAAGGGAAAAGAAAAGGCTTCATTCATGGTGAATGAAAGGCCTCTCCGAAGTGAAAAAGGTGATGATGTTCTTTCACCTTTCTTTTGGTTAAGAGAGGAGAAAGATGGTGAAAAGTCAAGTCAGCACACCAATGAGGATCAACTCATTGATGGCCCAACACCAGTTCCTCCCTCATTCAGTGATCTCAAGGACAGTGATGATGAAAACCAATCTAAAGTGACTCCATCAGATGAGGTGCAAAATAAAGCATCTGTTGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCATGCTCCCCTGAATTATTTTCAAGTCCGTTTAAAATGCAGGTTGAGGATACTGGTGAGATTGATGGAAATCAAGAGGAATTGGTAGCAGCCTCACAAGAGCTGGAAAGAAATCAGTTAAGTGCTGATGCTGGCAATAGAATGTTTGAGAATCCCAAAGAAGGAAATAACTTGGCTGATGTGTTACCATCAAGTGTGTCTTCTGGTCAAATTAGAAGTTTTGATGATTCAAATGTAATAAAGAAGTCTAAAAAGAGACGCAGACAAGCTAAGGAAAAAGCTAGGCAAGAGCAGATTGGGGATCAAAATGATCCAATAAAAGGAACAGATGTTGACCCAAATATATCATTAAAAGTCACTAGAGAGCAAGCATCGGACTATGAGCACAAATCTTCTAGCCTGGGGAAGACTAATAGAAGGGGCAAGAGGGTTTGTTTTGATACTGGTGCAAATCGAACACCTCAAAGTGCTAGTACAGTCCCCAATATAGCAGGAGTTCTAAGGGATGGTGAGATGAACATGACTAAGGATTCATGTGCTTCATCATGTAAACAAGAAAATAAGAAACATTGTCCTCAGAAGATTGCTGTAAAGTATCATAAGAAAAGGTCTGGAAAACAAAAGCTAGATTATGTGCAAGACCTAGCTGAAGATTTATCTTCGATGCAAAACCAAACCAATGAGGTTGCTGGTTCTGCTTCATCCATTCTGAGTCTGCAGATGGATAATCATGGAAAGACCTCTGATAGCAGGCAAAGGAAAAGCAAATTATCAAGAAAATCTATCTCTAGCAGTAGAGAATCGTGGAGTACTAAAAAGCTGAAACTTTCCTCTGACTGTATGTCTAAGACTAAAAATGGTGAAGAAATTCAACCTAATGAAAGTATTCAGCAAGGTCCCAATGCCAGGGCTTTGAATGGCACGTCAGCAGAGAAACATCGTCCTTTGATGGATAAACCATTTTTAAAGAAATGTGAGACCCATGTCGAAAAGCATCAATGTGCTTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCAGGCCCGATGGTGCATTATTTAGATGGCAAGCCTGTAAATGCAGATTATGAAGGAGGATTTACAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTTGAAGATGATAATAATGCAATAAATCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATCAAATGTAGTTTTTGTGGACTTAAAGGAGCTGCACTCGGTTGCTATGAGAAAAGTTGTCGCAGGAGTTTTCATGTTCCTTGTGCCAAGTGGACTTCTCAATGTCGATGGGATATGGAAAACTTTGTCATGTTATGCCCTCTACATGCTTCCTCTGTGTTGCCCTGTGAAAGTTCAGGATCTCAAAAAAGGAACAAGAAATGCACAGCTAAGGAGGGTCAAAACCGTGGTCACAAGCATGACTCTACAAGCCAAGGTCGGATTGCTCATGGATCTTACAAGAAAATTGTACTGTGTTGTTCTGCTCTATCCTCACAGGAGAAGGATGTTGTTTCCGAATTTCAAAAAGTATCCAAGGTTACAATTCTGAAGAATTGGGATTCAAGTGTTACCCATGTAATAGCATCAACGGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAACATTGAGTGGATCAAAGCTTGCATGAAGGACATGGAACCTGTTGATGAGGAGCGTTATGAAATTAACGTTGACATCCATGGTATCAAGGATGGACCTCGTCTTGGACGACTAAGAGCATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGAGATTTTATCCCATCATACAAGGGCTATCTGCAAGACCTTGTGATAGCTGCCGGAGGGATTGTTCTACATAGAAAACCAGTGTCTGGAGACAAAAAGGCAATATCACCTGATATGCATCCATGCCAAACTCTCATAATTTACAGTCTTGAGCTTCATGATAAATGCAATCCTTTGGAAAATGATACAATTTTCAGCCAAAGGCGACGTGATGCAGAGGAGCTGGCAAGTTCTACAGGTTCAAAGGTCGCAAGCAATACATGGATTCTGAATTCAATTGCAGCCTGCAAGCTGCAAGGCCTTGCTCAATGA 2997 0.4127 MGDLEKMGRELKCPICLSLLDSAVSLTCNHLFCKSCIYKSMKSASACPVCKIPFTRREVRPAPHLDNLVTIYKSMEAASGTTIFVTQNVPPNEEKQCEGDAGFGEKEAGGTHENQAREKKSRRGKKSRKKNKTSMESSGSDIAKPSFPAKKRVQVPQNILEETPLKNLKIGDYLSEIDKKGKEKASFMVNERPLRSEKGDDVLSPFFWLREEKDGEKSSQHTNEDQLIDGPTPVPPSFSDLKDSDDENQSKVTPSDEVQNKASVDLFDSEMFEWTQRPCSPELFSSPFKMQVEDTGEIDGNQEELVAASQELERNQLSADAGNRMFENPKEGNNLADVLPSSVSSGQIRSFDDSNVIKKSKKRRRQAKEKARQEQIGDQNDPIKGTDVDPNISLKVTREQASDYEHKSSSLGKTNRRGKRVCFDTGANRTPQSASTVPNIAGVLRDGEMNMTKDSCASSCKQENKKHCPQKIAVKYHKKRSGKQKLDYVQDLAEDLSSMQNQTNEVAGSASSILSLQMDNHGKTSDSRQRKSKLSRKSISSSRESWSTKKLKLSSDCMSKTKNGEEIQPNESIQQGPNARALNGTSAEKHRPLMDKPFLKKCETHVEKHQCAFCLSSEESEVSGPMVHYLDGKPVNADYEGGFTVTHCHRNCTEWAPNVYFEDDNNAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSQCRWDMENFVMLCPLHASSVLPCESSGSQKRNKKCTAKEGQNRGHKHDSTSQGRIAHGSYKKIVLCCSALSSQEKDVVSEFQKVSKVTILKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIEWIKACMKDMEPVDEERYEINVDIHGIKDGPRLGRLRALNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGIVLHRKPVSGDKKAISPDMHPCQTLIIYSLELHDKCNPLENDTIFSQRRRDAEELASSTGSKVASNTWILNSIAACKLQGLAQ* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00844 998 MobiDBLite consensus disorder prediction 539 582 - -
Rops11g00844 998 FunFam Protein BREAST CANCER SUSCEPTIBILITY 1 like 883 991 - -
Rops11g00844 998 CDD ePHD 611 728 - -
Rops11g00844 998 SMART ring_2 682 728 IPR001841 -
Rops11g00844 998 SMART ring_2 13 50 IPR001841 -
Rops11g00844 998 FunFam Breast cancer associated RING 1 1 83 - -
Rops11g00844 998 MobiDBLite consensus disorder prediction 98 120 - -
Rops11g00844 998 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Rops11g00844 998 SUPERFAMILY RING/U-box 4 73 - -
Rops11g00844 998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Rops11g00844 998 Pfam BRCA1 C Terminus (BRCT) domain 798 848 IPR001357 -
Rops11g00844 998 MobiDBLite consensus disorder prediction 213 262 - -
Rops11g00844 998 Pfam PHD-like zinc-binding domain 649 728 - -
Rops11g00844 998 CDD BRCT_Bard1_rpt1 775 849 - -
Rops11g00844 998 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 994 IPR031099 GO:0006281|GO:0006974
Rops11g00844 998 MobiDBLite consensus disorder prediction 520 585 - -
Rops11g00844 998 Gene3D BRCT domain 883 991 IPR036420 -
Rops11g00844 998 FunFam Breast cancer associated RING 1 605 731 - -
Rops11g00844 998 MobiDBLite consensus disorder prediction 335 353 - -
Rops11g00844 998 SUPERFAMILY BRCT domain 775 869 IPR036420 -
Rops11g00844 998 SMART PHD_3 681 729 IPR001965 -
Rops11g00844 998 MobiDBLite consensus disorder prediction 88 155 - -
Rops11g00844 998 ProSiteProfiles BRCT domain profile. 882 998 IPR001357 -
Rops11g00844 998 SMART BRCT_7 884 991 IPR001357 -
Rops11g00844 998 SMART BRCT_7 770 851 IPR001357 -
Rops11g00844 998 MobiDBLite consensus disorder prediction 323 390 - -
Rops11g00844 998 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Rops11g00844 998 MobiDBLite consensus disorder prediction 743 764 - -
Rops11g00844 998 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Rops11g00844 998 MobiDBLite consensus disorder prediction 735 766 - -
Rops11g00844 998 Gene3D BRCT domain 771 877 IPR036420 -
Rops11g00844 998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 731 IPR013083 -
Rops11g00844 998 ProSiteProfiles BRCT domain profile. 800 861 IPR001357 -
Rops11g00844 998 ProSiteProfiles Extended PHD (ePHD) domain profile. 608 729 IPR034732 -
Rops11g00844 998 FunFam Breast cancer type 1 susceptibility protein homolog 772 878 - -
Rops11g00844 998 SUPERFAMILY BRCT domain 886 995 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00844 Rops-Chr11 11979497 11985585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00844 8 63 RAD5 or RAD16-like Gene Family AT5G22750 36.207 2.19e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00844 K10683 - gmx:100804958 1379.77