Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1013 ATGGAAGGAGAAGGTTTAGGAGATTGCTGTTCGTCCAACTCCACCACCACCAGGAACAGCCAGAAACGGAAGCAACAGCAACAGGACCAAGACAAACCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAGCCCAACAAGAGGTCCAGAATCTGGTTGGGTTCTTACGCAACCCCCGTCGCCGCAGCACGCGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCTTCCGCTCGCCTCAACTTCCCCGAACTGCTCTCCCAAGACGACGACGTTTCGACCCAACAGGGCAACATGTCCGCCGATTCTATACGCAAGAAAGCGACCCAAGTCGGCGCGAGAGTCGACGCGCTCCAAACCGCGCTTCAACCCTCGTCGTCCCACTCCGCTAATTCCAGCCACGTCAGCTCTGACAAACCAGACTTGAACGAGTATCCTAAACCCGAAGACTAG 474 0.5633 MEGEGLGDCCSSNSTTTRNSQKRKQQQQDQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLSQDDDVSTQQGNMSADSIRKKATQVGARVDALQTALQPSSSHSANSSHVSSDKPDLNEYPKPED* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1013 157 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Pvu8g1013 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 157 - -
Pvu8g1013 157 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Pvu8g1013 157 MobiDBLite consensus disorder prediction 126 146 - -
Pvu8g1013 157 MobiDBLite consensus disorder prediction 97 112 - -
Pvu8g1013 157 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Pvu8g1013 157 MobiDBLite consensus disorder prediction 8 23 - -
Pvu8g1013 157 MobiDBLite consensus disorder prediction 1 36 - -
Pvu8g1013 157 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Pvu8g1013 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 157 - -
Pvu8g1013 157 MobiDBLite consensus disorder prediction 97 157 - -
Pvu8g1013 157 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Pvu8g1013 157 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Pvu8g1013 157 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Pvu8g1013 157 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1013 Pvu-Chr8 10466381 10466854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1013 1 130 AP2-EREBP Transcription Factor Family AT5G67190 62.308 2.38e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu8g1013 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1013 K09286 - gmx:100801528 250.751