Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0130 ATGGATAGTTGTATATATATTAGTTCGTCTGATGATGACTTGGAGGAGATAGATGTTCGAAAGAGAACTCTTCCACAATGGGCTACACCTACTGAAAGGAGTTCAGATTATGGTAGGCGGGATAATTCTTCAAGAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAATGTTTATAATCATTCACAAATCAAACCTCATACACAACCTGTGTCCGGCACCAATGCGCCCAACAACAGAAATGCACGAAGTGATGAACCTTCCTACCATGCTCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCGAACTTCAAATTCTCATAGTGCAGATTATGAGAAAATGTCATCTCAGCAACCTTTCAAGAAGATCCTTCCTCCATCTCTTCCGCCTTCTGCAACAAGGGCCCTTCCTTCTTCTTTATTTGCGTCAGACATCAGATTAAGCAAGTTAAAAGATAACACAGGCAATAGTCATCTTCATGATGCATACAAGAATCGTCGCCAGGGAGTAGGGCCTAGCACATCCGGTGACAGGGGCTACATTCGTGACAGTTTTAGCAGGGGCTTTGACGGAGATCATTTATTTTATCAAAATGGTGGGAACAGGATTCTTCCACCGTCTTTGGTGCCTGGAAAGGCCATAACTCCACACTTTGCTATTTCTAGTGAATCAGCATATCGTTCTGGAATAGCTGATGAAAGATCTGCCGAAAATGATGAGAGACTTATTTACGAGGCAGCATTACTGGATATCAGTCAACCTAAAACAGAGTATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAATATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCGAAAACAGATGATACATGCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGACGACAATGGTGGTATAGATGTGGAAAAGCATAAAAATAGTGTGGAATGTGATAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGGTGAAAAGCTTGATGTTTTAGTTTATCATGGGGGCAGTAGGACAAAGGATCATATTGCACTTGCAAAATATGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTCCCTAAGCAACCGTTAGTTGAGGAGGATGATATCGAGGACAAAAATGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAACCATTTAATGGAAATAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACATTGAATGTGGTTCTGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCCCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACGCCTATTCAAAACAGTATTGATGATTTGTATAGCTACTTTAGATTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAGATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGCAAAGTGGATTTCTCAGATGAGGAGCGAGCCTTCTATACCAAGTTGGAATCAGACTCACGCTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTGATGCTCTTACGTCTTCGACAGGCTTGTGATCACCCGCGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAACGTCTTCCAAGAGAAATGCAGATTAATCTGTTTAATTGTTTGGACTCAACCTCTATCTGTCACATTTGCAATGATCCCCCTGATGACCCTGTTATTACAATGTGTAGCCATGTCTTCTGTTATCAATGTGTACATGAATATTGTTCTGGTGATAATACGTGCCCTGCAGTTAATTGTAAAGAAACAATCGGCTATGATCTTATTTTCTCCAAAGTTACTTTGAGGAGTTGTATCTCTGATGATGGTGGCACTTCTAGTTCTTCAAATTCACTTCTTTGTGATTATTCGCTAGTGCAGCAGGATCATTACGTTTCATCTAAAGTCAAAGCTGTTCTTGAGGTTTTGCAGTCAAAGTGTTATGTGAAGATATCTAATTCTGACTTAGCGAACTCTGGATGTTGTAGAGATTCACCGTCTTCTGATAATTTAGATGTTGATGACTGTGATTCAGATGTTAGGATTACAAAACACACAAGAAAGTATTCTGACTCCACAACTGAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGAAATCATTGCGTCAATATGATATACCGTACAGGAGACTCGATGGTAGGATGACTCTAGGTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGGTCCGGAGCTCGCCTTACAGTGGATGATCTGAAATATCTGTTCATGGTCTAG 3036 0.4061 MDSCIYISSSDDDLEEIDVRKRTLPQWATPTERSSDYGRRDNSSRGANSSNLSSSNVYNHSQIKPHTQPVSGTNAPNNRNARSDEPSYHAQNGNTSQQQTVNSRTSNSHSADYEKMSSQQPFKKILPPSLPPSATRALPSSLFASDIRLSKLKDNTGNSHLHDAYKNRRQGVGPSTSGDRGYIRDSFSRGFDGDHLFYQNGGNRILPPSLVPGKAITPHFAISSESAYRSGIADERSAENDERLIYEAALLDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILALRSLQSKSKTDDTCNHKTEALNLDDDDDNGGIDVEKHKNSVECDREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGGEKLDVLVYHGGSRTKDHIALAKYDVVLTTYSIVTNEVPKQPLVEEDDIEDKNGERFGLSSEFSVSKKRKKPFNGNKKSKKGRKGIDIECGSGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSDEERAFYTKLESDSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKRLPREMQINLFNCLDSTSICHICNDPPDDPVITMCSHVFCYQCVHEYCSGDNTCPAVNCKETIGYDLIFSKVTLRSCISDDGGTSSSSNSLLCDYSLVQQDHYVSSKVKAVLEVLQSKCYVKISNSDLANSGCCRDSPSSDNLDVDDCDSDVRITKHTRKYSDSTTEGPIKAIVFSQWTSMLDLVEKSLRQYDIPYRRLDGRMTLGARDKAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGARLTVDDLKYLFMV* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0130 1011 ProSitePatterns Zinc finger RING-type signature. 722 731 IPR017907 -
Pvu7g0130 1011 MobiDBLite consensus disorder prediction 17 137 - -
Pvu7g0130 1011 SMART ultradead3 267 571 IPR014001 -
Pvu7g0130 1011 SUPERFAMILY RING/U-box 700 765 - -
Pvu7g0130 1011 Pfam SNF2-related domain 274 670 IPR000330 GO:0005524|GO:0140658
Pvu7g0130 1011 MobiDBLite consensus disorder prediction 41 117 - -
Pvu7g0130 1011 CDD SF2_C_SNF 854 962 - -
Pvu7g0130 1011 Pfam Helicase conserved C-terminal domain 857 953 IPR001650 -
Pvu7g0130 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 767 IPR013083 -
Pvu7g0130 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 1010 IPR027417 -
Pvu7g0130 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 592 IPR027417 -
Pvu7g0130 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 554 IPR014001 -
Pvu7g0130 1011 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 55 1010 - -
Pvu7g0130 1011 Gene3D - 246 336 IPR038718 -
Pvu7g0130 1011 MobiDBLite consensus disorder prediction 154 183 - -
Pvu7g0130 1011 Gene3D - 607 1009 IPR027417 -
Pvu7g0130 1011 CDD DEXDc_SHPRH-like 271 592 - -
Pvu7g0130 1011 SMART helicmild6 870 953 IPR001650 -
Pvu7g0130 1011 MobiDBLite consensus disorder prediction 333 359 - -
Pvu7g0130 1011 Gene3D - 481 605 IPR038718 -
Pvu7g0130 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 840 1006 IPR001650 -
Pvu7g0130 1011 MobiDBLite consensus disorder prediction 333 375 - -
Pvu7g0130 1011 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 55 1010 - -
Pvu7g0130 1011 SMART ring_2 707 744 IPR001841 -
Pvu7g0130 1011 Pfam Zinc finger, C3HC4 type (RING finger) 707 742 IPR018957 GO:0046872
Pvu7g0130 1011 Gene3D - 363 448 IPR038718 -
Pvu7g0130 1011 ProSiteProfiles Zinc finger RING-type profile. 707 745 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0130 Pvu-Chr7 885866 898016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0130 1 911 RAD5 or RAD16-like Gene Family AT1G50410 54.623 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu7g0130 SNF2_N 6.9e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0130 - - gmx:100795142 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0130 7 885866 898016 Pvu7g0130 7 885866 898016 ECH