Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0838 ATGAACCTCCACCACCCCTTTAACCCACCCACCTCAACCACAAAATTTTACACCCACCCACCTCGCAAAACCCCCCAAAAACCCCAACCACGCCACAACAAGCTCCTCCGGGTCATCCTCACCGACCACGACGCCACCGACTCCGACTCCTCCGGCGACGATGACACTCCAAAAAACCCTTCAAAACACAAAAAAGTCAAAAGAGAAATCACCCACATCACCATAAGCTTTCCCTTTATCCCACAACCCCCAACACCAACCCCAACTGTAACACCTCCTTCTTTTTCCACTAACCCGACCCCTTTAACACAACCCGAGAAACGACCCGCCGCCCCTCGCTGCCGGAACAAGTTTCGAGGTGTCCGCCAGAGACCGTGGGGACGGTGGACCGCCGAGATCCGTGACCCGATCCAAAGAAAACGGGTCTGGCTCGGCACCTTCTACACGGCGGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCAGTGAAGCTCAAGGGCCCTGACGCCGTCACCAACTTCCCCCAAGTCGCCACCGTTAAAAGAGAACTCAAAGTTTCGCCGCCGGAGGCCACCTGCTCCGGCGAGGGTTTCTCGTCGCCGACGTCCGTCCTTGCCTTCTGCGACGGTGACTCCACGCCGTTCGACGCGCCGTTTAGTATGACAGACGTTAACTTGGGCGTGGTGAGTCAGCGCTTCGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCAAGTTAA 753 0.5803 MNLHHPFNPPTSTTKFYTHPPRKTPQKPQPRHNKLLRVILTDHDATDSDSSGDDDTPKNPSKHKKVKREITHITISFPFIPQPPTPTPTVTPPSFSTNPTPLTQPEKRPAAPRCRNKFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTAEEAAAVYDEAAVKLKGPDAVTNFPQVATVKRELKVSPPEATCSGEGFSSPTSVLAFCDGDSTPFDAPFSMTDVNLGVVSQRFAKEEFGEFDPDEFLTWPS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0838 250 MobiDBLite consensus disorder prediction 36 62 - -
Pvu6g0838 250 Gene3D AP2/ERF domain 116 176 IPR036955 GO:0003700|GO:0006355
Pvu6g0838 250 MobiDBLite consensus disorder prediction 1 20 - -
Pvu6g0838 250 MobiDBLite consensus disorder prediction 79 99 - -
Pvu6g0838 250 MobiDBLite consensus disorder prediction 1 112 - -
Pvu6g0838 250 PIRSF PTI6 7 250 IPR017392 GO:0003700
Pvu6g0838 250 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Pvu6g0838 250 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Pvu6g0838 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 17 209 - -
Pvu6g0838 250 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 209 - -
Pvu6g0838 250 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Pvu6g0838 250 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Pvu6g0838 250 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Pvu6g0838 250 SUPERFAMILY DNA-binding domain 117 174 IPR016177 GO:0003677
Pvu6g0838 250 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0838 Pvu-Chr6 19885920 19886712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0838 22 206 AP2-EREBP Transcription Factor Family AT4G27950 41.327 8.32e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g0838 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0838 K13434 - gmx:102660028 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0838 6 19885920 19886712 Pvu6g0838 6 19885920 19886712 ECH
Pvu6g0838 6 19885920 19886712 Pvu8g2545 8 56074147 56075959 PCT