Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0544 ATGTCATCATCAAGCACAAGAAGGAAGACGAAGAACATGTTTGGAATATGTTGTGGTGATGACGTGAACGATGTAAATGATAAAGAGATTGAGGCAAGAGAAGATGGCAGCCAATACAGTCTCACAGGTGTTCTTCTTCCTTCTCTTGGTGCCACTGCCATCAACAACGGGAGTCGCAGACCAATTCTTCATCGCAATATCATCTCCCCTTATAATCGTCGTTACAGAATATGGACCAAGTTTCTGCTAATATTGGTGTTCTACACAGCTTGGATATGTCCATTTGAATTTGGTTTCCTTGAAAAATCAAAGGGTGCACTAGCTGTAACCGACAATGTTGTAAACGGGTTTTTTGCCATTGACATTGTTCTCACCTTCTTCGTTGCTTACCTTGATAAGTCTACTTATCTATTAGTTGATAACTACAAACTCATTGCTTTGAGATATGCTAAATCTTGGTTGATTTTGGATGTCATTGCTTGTGTTCCATATGAAGTTGTTCGTAGTTTGTTGCCACCTCCTCTTCAGTTCTATAGTTACTTGAATATTCTCCGACTTTGGCGTCTCCATCGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGACAGAAATTATAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACATGTGTTACTCTATTCGCAGTGCATGCTGCTGCATGCTTTTTCTTTTTTCTTGCTGCACGAGATGATCCACAAAATACATGGCTTGGACTTGTTCCTAAGGCCATCGACCAAAATATATGGGGAAAATATGTAGTAGCTATATATTGGTCCATAGCCACCCTTGTATCAGTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAAATGGTATTTAGCATTTTGTATATGCTCTTTAATCTTGGACTCACCTCATATTTGATAGGCAACATGACCAACATGGTTGTCCACTGGACTGAAAGAACTAAGAGATATAGAGACACTGTCCAATCTGCTTCAAATTTTGCCCATAGGAATCGCTTGCCTATTCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAGGTATAGAACTGATTTAGAAGGACTACAACAACAAGAGATCATTGATTCCCTTCCAAAAGCCATTCACTCTAGCATCTCACACTACCTATTCTTTTCACTTATGGACAAAGTGTACTTATTCCATGGAGTGTCAAATGACCTACTTTTTCAATTGGTATCAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGACTTTTATATATTCATTACAGGATCTGCTGATCTTATCACTCAAACGAATGGACTAGAACAGATTGTTGGAGAAGTAAGGCCAGGAGATGTAGTTGGTGAAATAGGAGTCTTGTGTTATAAGCCACAATTGTTCACAGTCCGGACCAAGAGATTGAGCCAGATCTTACGTTTGAATCGTACCACATTTCTAAATCTTACTCATTCAAATGTTGGAGATGGAACAATGATCATAAACAATTTTCTTCATCATTTACATGAACTAGGGAATCCACTAATGGAAGAAATTTTGGCAGAGGCAGAAGCAATGTTGGCTAGGGGCAAAATGGATTTGCCAATTAGTTTATTGTTTGCAGCAAGTAGAGGTGATGATATTTTGTTGAATCAATTGTTAAAGAAGGGTTCAGATCCAAATGAACCAGATAAGAATGGAAAGACAGCAATGCATATTGCAGCTTGCAAAGGCAATAAACATTGTGTAATTGTGCTTCTAGAACATGGAGCAAATCCCAACATGAAAGACATGGAAGGAAATTCGGCACTATGGGAAGCAATTAAGGGTGGACATGAAACTGTGATGAGAATTCTTGTAGAAAATGGTGCAGAAATATCATCTAATAATGTAGTTGATTATGCAAGATTGGCCATTGAGAAAAACAACTTAGAAATTTTGAAGGAGATTATTCAACGTGGTGGGGATGTGATGCAATGTAGTGATAAAATGACCACACTGCTCCATGCTGCAGTGTGTGAGGGAAATTCTGAAATAGTGAAGTACCTTGTAGAGCTAGGAGCAGACATTGATAGACAAGATAGTGTTGGGTTAACTGCAAGATCTTTAGCAGAACATCAATGTCATGAAGAAATACTAAACATATTTAACACAATTGGACACAAGAATGAAAGAAATGGTATTCCTCAAATTTCAACCTTTGTTGGTAGGTGTCAAAGTGAACCCACAATACCAGCCCTTCCTCTACCCATCAAACCACCTAATAAAGAACTCACATGGTTTGATAATCATCAAAGAAGAAGGGTCAGCCCTTTCCACAATTCCTTTTTTGGAATCATGTCATCTGCAAATTATGGTAAAAATGATTCAACAACATCATCTCAAACGAGTCAAAGTATTAAAGAGGAAGTGTTACCCAGAATAACACTTAGTTGTCCAGAGAAAGGTGAAGATGCAAAGAAGCTTCTGTTTTTGCCAGATTCCATAAACGAATTGCTTCGTGTTGGTGCTAAAAAGTTTAATTGCACTCCCTCCAAAATATTGACCACAGAAGGAGCTCAAATTGAAGACATAGATGTTATAAGAGATGGTGATCATCTTCTTCTTGTATAG 2622 0.3814 MSSSSTRRKTKNMFGICCGDDVNDVNDKEIEAREDGSQYSLTGVLLPSLGATAINNGSRRPILHRNIISPYNRRYRIWTKFLLILVFYTAWICPFEFGFLEKSKGALAVTDNVVNGFFAIDIVLTFFVAYLDKSTYLLVDNYKLIALRYAKSWLILDVIACVPYEVVRSLLPPPLQFYSYLNILRLWRLHRVSAMFARLEKDRNYSYFWVRCCKLTCVTLFAVHAAACFFFFLAARDDPQNTWLGLVPKAIDQNIWGKYVVAIYWSIATLVSVGYGDLHPVNTKEMVFSILYMLFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQSASNFAHRNRLPIRLQEQIFAHLLMRYRTDLEGLQQQEIIDSLPKAIHSSISHYLFFSLMDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYIFITGSADLITQTNGLEQIVGEVRPGDVVGEIGVLCYKPQLFTVRTKRLSQILRLNRTTFLNLTHSNVGDGTMIINNFLHHLHELGNPLMEEILAEAEAMLARGKMDLPISLLFAASRGDDILLNQLLKKGSDPNEPDKNGKTAMHIAACKGNKHCVIVLLEHGANPNMKDMEGNSALWEAIKGGHETVMRILVENGAEISSNNVVDYARLAIEKNNLEILKEIIQRGGDVMQCSDKMTTLLHAAVCEGNSEIVKYLVELGADIDRQDSVGLTARSLAEHQCHEEILNIFNTIGHKNERNGIPQISTFVGRCQSEPTIPALPLPIKPPNKELTWFDNHQRRRVSPFHNSFFGIMSSANYGKNDSTTSSQTSQSIKEEVLPRITLSCPEKGEDAKKLLFLPDSINELLRVGAKKFNCTPSKILTTEGAQIEDIDVIRDGDHLLLV* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0544 873 SUPERFAMILY Voltage-gated potassium channels 70 312 - -
Pvu1g0544 873 Gene3D - 78 312 - -
Pvu1g0544 873 PRINTS Ankyrin repeat signature 570 585 IPR002110 GO:0005515
Pvu1g0544 873 PRINTS Ankyrin repeat signature 682 696 IPR002110 GO:0005515
Pvu1g0544 873 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Pvu1g0544 873 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 19 872 - -
Pvu1g0544 873 Gene3D Jelly Rolls 357 514 IPR014710 -
Pvu1g0544 873 Gene3D - 537 721 IPR036770 -
Pvu1g0544 873 Pfam Ion transport protein 76 318 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu1g0544 873 SUPERFAMILY Ankyrin repeat 503 722 IPR036770 -
Pvu1g0544 873 CDD CAP_ED 391 496 IPR000595 -
Pvu1g0544 873 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Pvu1g0544 873 Pfam Cyclic nucleotide-binding domain 411 495 IPR000595 -
Pvu1g0544 873 Pfam KHA, dimerisation domain of potassium ion channel 810 872 IPR021789 -
Pvu1g0544 873 SUPERFAMILY cAMP-binding domain-like 316 511 IPR018490 -
Pvu1g0544 873 Pfam Ankyrin repeats (3 copies) 541 632 IPR002110 GO:0005515
Pvu1g0544 873 Pfam Ankyrin repeats (3 copies) 640 697 IPR002110 GO:0005515
Pvu1g0544 873 PRINTS EAG/ELK/ERG potassium channel family signature 88 95 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu1g0544 873 PRINTS EAG/ELK/ERG potassium channel family signature 111 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu1g0544 873 PRINTS EAG/ELK/ERG potassium channel family signature 122 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu1g0544 873 PRINTS EAG/ELK/ERG potassium channel family signature 259 276 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu1g0544 873 PRINTS EAG/ELK/ERG potassium channel family signature 285 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu1g0544 873 PRINTS EAG/ELK/ERG potassium channel family signature 303 312 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu1g0544 873 PANTHER POTASSIUM CHANNEL AKT1 19 872 IPR045319 GO:0005249|GO:0006813
Pvu1g0544 873 ProSiteProfiles cAMP/cGMP binding motif profile. 391 510 IPR000595 -
Pvu1g0544 873 SMART ANK_2a 633 662 IPR002110 GO:0005515
Pvu1g0544 873 SMART ANK_2a 602 631 IPR002110 GO:0005515
Pvu1g0544 873 SMART ANK_2a 536 565 IPR002110 GO:0005515
Pvu1g0544 873 SMART ANK_2a 569 598 IPR002110 GO:0005515
Pvu1g0544 873 SMART ANK_2a 666 695 IPR002110 GO:0005515
Pvu1g0544 873 ProSiteProfiles Ankyrin repeat region circular profile. 666 697 - -
Pvu1g0544 873 SMART cnmp_10 391 508 IPR000595 -
Pvu1g0544 873 ProSiteProfiles Ankyrin repeat region circular profile. 602 633 - -
Pvu1g0544 873 ProSiteProfiles Ankyrin repeat region circular profile. 569 600 - -
Pvu1g0544 873 ProSiteProfiles KHA domain profile. 810 873 IPR021789 -
Pvu1g0544 873 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0544 Pvu-Chr1 6103761 6111948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0544 20 872 Ion Channels AT2G25600 55.991 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0544 K21867 - gmx:100808832 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0544 1 6103761 6111948 Pvu1g0544 1 6103761 6111948 ECH
Pvu1g0544 1 6103761 6111948 Pvu9g0981 9 14739060 14745836 PCT