Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0085 ATGATTGTTGCAATGGACTTGAATGCCTCGCCGGTTCCAGAGGAAGATGAAGATATTTTTGAAGAGAAGATACATGTTGAAGAGTTTCATGCACCTGAAGAGCGCATAGAAACTGGAGCTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGACCAGATGACAGACCTGTTCATGTGTCACAGTCACCAGGATATGATCAGCTATTTCCCGCTAAGAACCTTAAATCATATGATAAAAGCAGGCTTCCTCCAGGGTGGTTGGATTGTCCTTCATTTGGCCAGGAAATTTTTTGCATGATACCTTCCAAGGTTCCACTCGGTGAATCTTTCAGTGATTGTATTCTTCCTGGTAAAAGATATTCATTTAAACAAGTGATACATCAACAAAGAGTTTTAGGGAGAAAACTTGGCCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTGTCTGATTTGAAAAAAGAGTGCATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGATTCTGTACCTGATAATTTAGCTGTGAACCAGTTCGTCTATGAGGTTTCACAATTTTTGTTACGTCAAAAACACCCAAAGAAGTATATACTTGTTCATTGTACACATGGACATAATCGTACAGGGTACATGATCATCCACTATCTAATGCGTGCCATGTCCATGTCTGTTACTCAGGCAATAAAAATATTTTCTGAAGCTCGTCCTCCTGGAATCTACAAACCTGATTATATTGATGCATTGTACGCATTTTATCATGAGAAAAGGCCTGAAATGGTAGTTTGTCCTCCCACTCCTGAATGGAAGAGGTCTTCAGAATTTGATCTCAATGGTGAAGCTGTTCCAGATGATGATGATGATGGAGTACCAGGTCCTGATTTGCAGGAGAACCATGAGACAGACACGCGAATGACAAATGATGATGTTTTAGGAGATGAGATTCCTTCTGATCAGCAGGATGCATTGCGTCAGTTCTGTTATCAAACACTTAAATTGGGTGTGGGGGCTAGGGGACACACCCAGTTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGAAAATTTACAATTGTTACGACAACGCTACTATTATGCAACATGGAAAGCAGATGGTACAAGATACATGATGCTAATAACAGTGGATGGATGTTACTTAATTGATAGAAGTTTTAATTTTCGAAGGGTTCAAATGAGGTTTCCTTGCAGGAGTACTAATGAGGGTTTGGGCGAGAAAACCCACCACTACACACTGCTTGATGGTGAGATGGTTATTGATACATTGCCAGATTCACAGAAGCAGGAGAGAAGATATCTTATATATGATATGATGGCAATCAACCAAGTGTCGATAATAGAGCGACCCTTCTATGAAAGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCATGAACGGCACCATATATATCAGAGCAGAAATCCTTACTACAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTCTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATATACCACGGACTCATGAAGGACTATTGAAGTGGAAATATGCTTATCTGAATTCAGTTGATTTTCTTTTTGAGGTTGATGGTGATCGTGAGATGCTTTTTCTCTATGAACGGGGAAAGAAGAAACTCTTGGAAGGGAATAGGGTTGAGTTCACAGATGGCTTAGATCCCTCAGATTATTCTGGAAAGATCATAGAATGTTCATGGGATTTTGATAAACTTGAATGGAAGTATATGCGCATCAGAACAGATAAATCAACTCCGAATGAGTTCAATACTTATAGGAAGGTGATGCGAAGCATAAGAGACAACATCACAGAGGAAGATTTGTTGAATGAAATAAGTGAGATTATCCGCCTTCCAATGTATGCTGACAGGATAAGAAATGACAGTAAAGCAAATCAGCATGCTAATGTGGCAAGGCGAAGGTGA 2052 0.4045 MIVAMDLNASPVPEEDEDIFEEKIHVEEFHAPEERIETGADIARREREERKRRLKRERPDDRPVHVSQSPGYDQLFPAKNLKSYDKSRLPPGWLDCPSFGQEIFCMIPSKVPLGESFSDCILPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKECIKHVKIQCRGRDSVPDNLAVNQFVYEVSQFLLRQKHPKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYAFYHEKRPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDTRMTNDDVLGDEIPSDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITVDGCYLIDRSFNFRRVQMRFPCRSTNEGLGEKTHHYTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPRNHERHHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDREMLFLYERGKKKLLEGNRVEFTDGLDPSDYSGKIIECSWDFDKLEWKYMRIRTDKSTPNEFNTYRKVMRSIRDNITEEDLLNEISEIIRLPMYADRIRNDSKANQHANVARRR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0085 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 581 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu10g0085 683 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Pvu10g0085 683 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 683 - -
Pvu10g0085 683 MobiDBLite consensus disorder prediction 300 315 - -
Pvu10g0085 683 CDD RNA_5'-triphosphatase 92 258 - -
Pvu10g0085 683 Pfam mRNA capping enzyme, catalytic domain 355 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pvu10g0085 683 CDD Adenylation_mRNA_capping 326 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pvu10g0085 683 PIRSF mRNA_capping_HCE 76 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Pvu10g0085 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Pvu10g0085 683 Gene3D Protein tyrosine phosphatase superfamily 66 284 IPR029021 -
Pvu10g0085 683 Gene3D DNA ligase/mRNA capping enzyme 314 553 - -
Pvu10g0085 683 Pfam mRNA capping enzyme, C-terminal domain 558 651 IPR013846 -
Pvu10g0085 683 PANTHER MRNA-CAPPING ENZYME 3 683 - -
Pvu10g0085 683 MobiDBLite consensus disorder prediction 285 315 - -
Pvu10g0085 683 Gene3D - 589 660 IPR012340 -
Pvu10g0085 683 MobiDBLite consensus disorder prediction 30 73 - -
Pvu10g0085 683 MobiDBLite consensus disorder prediction 30 64 - -
Pvu10g0085 683 SUPERFAMILY Nucleic acid-binding proteins 557 668 IPR012340 -
Pvu10g0085 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Pvu10g0085 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 279 IPR029021 -
Pvu10g0085 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 267 IPR020422 GO:0006470|GO:0008138
Pvu10g0085 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 316 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0085 Pvu-Chr10 1217532 1236124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0085 1 683 Protein tyrosine phosphatase (PTP) family AT3G09100 68.505 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0085 K13917 - gmx:100776633 1326.23